Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1310 ATGGCCGTCTCCAACGTCGCCTCCGTCCTTCTCCTGCTGTTGCTCTCGGCCACCACTATGTCCACCGTCTTCTGTCGCCGTGAAATGGAGCTGCTTCAGATGGCCCAGACTCAAGTCCTTGAAGCTAAGACTTGGGTTGAGATCAGTCGTCGTCAGAGTGGTGCCGCTAGCAATTCGATGCTTTCATCAACGTCGGCGGTGGCTCCAGCGGAGCTGGGTGTGGCGCTCAGAGACTGTGCTAAGCTGTATGAAGAGAGTGAGCACAGGCTGAATCAGTTAGTGCTGTGGAAGGAGGATCAGTATCAGAAGCCTGGTTTCGACCGAGAAGATGTTGTGACGTGGGTAAGTAGTGTAATGAGTAATCATAGGACATGTTTGGAAGGGTTGGAGGAGAAAGGGTACGTGGAAGCTGGTCATCAGGGTTTGCATAAAAACTTGACGACGTTGCTTGGAGAAGCTCTTCACTTGTTTGTGAAGAACAAGCCAAAAGCAAAAATTTCAAGTTTGAAAATTTTTTTCGAACTTGCAGATGTATCAGGGGATGGATTCTGGGGAAGAGACATGACGATTGAGAACAGAGCAGGTCCACAAGATCACCAAGCGGTGGCGATGAAAGTGAGCTCAGACCTTTCCGTCTTCTACAGATGCAGCTTCAGAGGCTACCAAGACACACTCTACGTCCACTCCAATCGTCAGTTCTACAGAGACTCCATAATTTCCGGCACCGTCGACTTCATTTTCGGCGACGCCTCCGTTGTCTTTCAGAGCTGCGACATCGTCCTCCGGCAACCAATGTCTCACCAGCCCAACTTCATCACAGCACAGGGACGGGACGACCCGAACGAACCCACCGGAATTGTGATCCAGAACTGTAGGGTTAGGGCGGCAGCGTCTGGCTCCGGCGGAGCAGCAGCAGCGACGAAAAACTACCTGGGAAGGCCATGGAAGAAGTACTCGAGGACGGTTTTCATGAAGAACGATCTAGATGGTTGCATTGATCCTAAAGGTTGGAGTGGAGAGTGGAGTGGTGGTTTTGCATTATCAACTTTATATTATGCAGAGTACATGAATAATGGTGCTGGTGCTTCTACTCAGAATAGGGTGAAATGGCCTGGCTTTCATGTGATCCGTGCTCCTTCGGAGGTTAGGCCGTTCTCCGTCGACGAGTTTCTGCTCGGAAGCCGGTGGATTCCGGCCACCGGAGTGCCCTTCTCAGCCGGTGTGTTTAAAATTTATATGTAG 1242 0.5097 MAVSNVASVLLLLLLSATTMSTVFCRREMELLQMAQTQVLEAKTWVEISRRQSGAASNSMLSSTSAVAPAELGVALRDCAKLYEESEHRLNQLVLWKEDQYQKPGFDREDVVTWVSSVMSNHRTCLEGLEEKGYVEAGHQGLHKNLTTLLGEALHLFVKNKPKAKISSLKIFFELADVSGDGFWGRDMTIENRAGPQDHQAVAMKVSSDLSVFYRCSFRGYQDTLYVHSNRQFYRDSIISGTVDFIFGDASVVFQSCDIVLRQPMSHQPNFITAQGRDDPNEPTGIVIQNCRVRAAASGSGGAAAATKNYLGRPWKKYSRTVFMKNDLDGCIDPKGWSGEWSGGFALSTLYYAEYMNNGAGASTQNRVKWPGFHVIRAPSEVRPFSVDEFLLGSRWIPATGVPFSAGVFKIYM 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1310 413 CDD PMEI-like_4 59 160 - -
Prci13g1310 413 ProSitePatterns Pectinesterase signature 2. 239 248 IPR033131 -
Prci13g1310 413 Gene3D - 158 408 IPR012334 -
Prci13g1310 413 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 156 IPR035513 -
Prci13g1310 413 SMART PMEI_2 7 156 IPR006501 GO:0004857
Prci13g1310 413 Pfam Plant invertase/pectin methylesterase inhibitor 43 137 IPR006501 GO:0004857
Prci13g1310 413 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 157 IPR035513 -
Prci13g1310 413 PANTHER PECTINESTERASE 177 398 - -
Prci13g1310 413 Pfam Pectinesterase 178 393 IPR000070 GO:0030599|GO:0042545
Prci13g1310 413 SUPERFAMILY Pectin lyase-like 178 407 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1310 Prci-Chr13 11584463 11589118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1310 178 408 Carbohydrate Esterase AT3G60730 66.667 7.01e-112 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1310 K01051 - pcin:129289890 812.757