Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1282 ATGGAAGCAAGAGAAGGAATCAGTTCAGGGGTTACGGTAATTGGAGCTGAAGCTCCATCAGCCTATCATGTGGCACCAAGAACTGAAGCACCAAGCCAGACTCAAGTTCCTGAAGCAGCACCAGCAGCACCAAATGTTGGCGCCTCACCGATGAGTGTGGGACTGGATGGAACAGCGGTTAAGAAGAAACGAGGTAGACCAAGGAAGTACGGACCAGACGGGGCTGTGGCTATGGCATTGTCACCTTTGCCTATTTCATCTTCAGCTCCACTTTCTAATGACTTCTCATCTGGGAAGCGGGGCAAATCAGCAGGAATGGAGTACAAGAAACATAAGAAACTGGGATTGGAGAATTTGGGTGATTTGAATGCTTGCTCTCTTGGTACAAACTTCATGCCTCATATCATCACTGTCAATACTGGCGAGGATATTACAATGAAGGTGATATCTTTTTCTCAACAAGGACCCCGGGCCATATGCATCCTTTCTGCTACTGGTGTGATTTCTAATGTTACTCTACGTCAGCCTGATTCTTCTGGGGGTACTTTGACCTATGAGGGCCGCTTTGAGATCCTCTCTCTTTCTGGATCGTTCATGCCAACTGACAGCCAGGGAACTCGAAGTAGGTCTGGGGGGATGAGTGTCTCGCTGGCTAGCCCCGATGGTCGTGTTGTGGGTGGTGGAGTTGCTGGCCTTCTCATTGCAGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTCCCAAACAGTCAGCAAGACCCGAAACCAAAGAAGACCAAATCTGATTATGCACCACCACCGGCTACCGTTACCCCACCAACAGTTGCAGTTTCGTCTGCACCACCCTCTACTAATGCTGAGAAAGAAGATGGCTTGGGCGGTGGACATGTCCTGCAAAATTCTGGAAACATGAATTCGAACATGACTTCTCCCTCGACATTCCGACGAGAAAACTGGGTGAACATGCACTCTATGCCGGACTTGAGACAGTCAGCTACCGACATTAACATCTCTCTGCCTGATAGTTAA 1029 0.4927 MEAREGISSGVTVIGAEAPSAYHVAPRTEAPSQTQVPEAAPAAPNVGASPMSVGLDGTAVKKKRGRPRKYGPDGAVAMALSPLPISSSAPLSNDFSSGKRGKSAGMEYKKHKKLGLENLGDLNACSLGTNFMPHIITVNTGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDSQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPNSQQDPKPKKTKSDYAPPPATVTPPTVAVSSAPPSTNAEKEDGLGGGHVLQNSGNMNSNMTSPSTFRRENWVNMHSMPDLRQSATDINISLPDS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1282 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 310 IPR039605 GO:0003680
Prci13g1282 342 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
Prci13g1282 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 252 - -
Prci13g1282 342 MobiDBLite consensus disorder prediction 247 312 - -
Prci13g1282 342 MobiDBLite consensus disorder prediction 298 312 - -
Prci13g1282 342 CDD DUF296 133 246 IPR005175 -
Prci13g1282 342 MobiDBLite consensus disorder prediction 22 54 - -
Prci13g1282 342 Gene3D - 133 262 - -
Prci13g1282 342 FunFam AT-hook motif nuclear-localized protein 1-like 133 263 - -
Prci13g1282 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1282 Prci-Chr13 11337907 11343566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1282 6 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.237 1.62e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1282 - - gmx:100796830 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g1282 13 11337907 11343566 Prci12g1699 12 34617132 34620072 CCT
Prci13g1282 13 11337907 11343566 Prci13g1282 13 11337907 11343566 ECH