Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1276 ATGGATCCAGTAGCTGCACAAGGTCGTCCTCTTCCACCACCCTTTCTCACCAGAGATCTTCATCTTCATCCCCATCACCAATTTCAGACCCATCATAACAACAATCACTCCGCCGCCGACGACGAGCAGGTCGGTAATGGCAGCTTGAGCCGCGGTCAGAAGCGAGATCACGAGAATACTTTTACTGACGGAAAGGAATTGGGTTCGAGCACGGTTTCCGCCGGAGGAGACGCCGCTGGAACTGGAGGTGGGGATAATAGCTCTAGAAGGCCTCGTGGAAGACCGGCGGGTTCGAAGAACAAGCCCAAGCCTCCGATCATAATAACGAGGGATAGCGCCAACGCGCTGAGGTCCCACGTCATGGAGATCGCCAACGGCGGAGACATCATGGAGAGCGTCGCCACCTTCGCACGGCGGAGGCAGCGTGGGGTTTGCATTCTGAGTGGGAGCGGCACCGTCACGAATGTCACTCTCCGGCAGCCTGCTTCGCCCGGTGCAGTTGTGACCTTACATGGAAGATTCGAGATTCTGTCACTGTCCGGCTCGTTTCTGCCTCCGCCAGCACCGCCTGCCGCTTCCGGGCTGGCCATTTATCTGTCCGGCGGACAGGGTCAAGTCGTTGGAGGCACCGTGGTGGGCCCGTTGTTGGCGTCAGGTCCGGTGGTCATTATGGCGGCGTCGTTCGGGAATGCAGCGTACGAGAGGCTGCCGTTGGAGGAGGACGAGACGGCGGCAGTGTCGGTGCCCGGAAGTGGAGGGTTAGGCTCGCCGGGAATTGCGGGACAACAACAACAATCTCAGCAGCCGCCGCAGCTACAGCAACAAATCGTCGGAGATCCTAACACTACATCGATGTTTCATGGTGTTCCTCAGAATCTTCTGAATTCTTGCCAATTACCAGCTGAAGGATTCTGGGGTGGAGCCAGTGCTGTTCGTCCTCCATTCTAA 948 0.577 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQTHHNNNHSAADDEQVGNGSLSRGQKRDHENTFTDGKELGSSTVSAGGDAAGTGGGDNSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGGDIMESVATFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLSGGQGQVVGGTVVGPLLASGPVVIMAASFGNAAYERLPLEEDETAAVSVPGSGGLGSPGIAGQQQQSQQPPQLQQQIVGDPNTTSMFHGVPQNLLNSCQLPAEGFWGGASAVRPPF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1276 315 CDD DUF296 117 184 IPR005175 -
Prci13g1276 315 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 293 IPR014476 GO:0003680
Prci13g1276 315 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 245 - -
Prci13g1276 315 MobiDBLite consensus disorder prediction 31 50 - -
Prci13g1276 315 FunFam AT-hook motif nuclear-localized protein 116 243 - -
Prci13g1276 315 MobiDBLite consensus disorder prediction 243 287 - -
Prci13g1276 315 PIRSF ESCAROLA 16 315 IPR014476 GO:0003680
Prci13g1276 315 ProSiteProfiles PPC domain profile profile. 113 249 IPR005175 -
Prci13g1276 315 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 229 IPR005175 -
Prci13g1276 315 Gene3D - 116 248 - -
Prci13g1276 315 MobiDBLite consensus disorder prediction 257 287 - -
Prci13g1276 315 MobiDBLite consensus disorder prediction 24 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1276 Prci-Chr13 11162915 11164537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1276 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 62.187 5.18e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1276 - - gmx:100816243 392.504