Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1208 ATGGATGGTATTCATGGGAGTGATTCTCGGATACACATGAGTGATGCACAACATCCAATGCATGTGCCGTATGTGCCAGAAAATGAACAACATGGATTGGACCATATGAGTGATGGGAATAGGATGGAAGACAATAACAATTGTGTGGATGCTAATGTCAGCAGACATGAGGGTGTAGAAGAAGTTTCCAACCCTGGAAATGTTACTGACGATCATGGTGTAATAATTGAACAAGCAAATGGTGACCAGCTCACGTTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCAGAAAAGGTTCAAGCTGTGCTATTACTATTGGGAGGCCGCGAAGTACCTTCCATGTCTGCAAATCCAATAAATGTGCACCATAATAATCGGGAAATGTCTGGGACTCCAGTAAAACTCAGTGTCCCTCAGAGATTAGCCTCTTTGATTAGATTTCGTGAAAAGCGGAAAGAACGGAATTTTGAAAAAAAAATACGTTACACTGTTCGTAAAGAAGTTGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACGTCTTCCAAGTCGAACCCTGATGAATCTGCGCCAGCTGCAACAAATTTGGTAACAAATGAAAATTGGACATCAGACAATGCTGGATCCCAACAGCAGGATGTTGCCTGTAGGCACTGTGGCATCAGTGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAACAAGGGAACTCTGAGGGACCTGACAAAAACTCCCTTACCTGGACACAATTCTTCATTAAATAGGAATGGGAATAAAAGTTGA 840 0.4286 MDGIHGSDSRIHMSDAQHPMHVPYVPENEQHGLDHMSDGNRMEDNNNCVDANVSRHEGVEEVSNPGNVTDDHGVIIEQANGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANPINVHHNNREMSGTPVKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESAPAATNLVTNENWTSDNAGSQQQDVACRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPGHNSSLNRNGNKS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1208 279 Gene3D - 210 274 IPR013088 GO:0006355|GO:0008270
Prci13g1208 279 PANTHER GATA TRANSCRIPTION FACTOR 28 20 263 IPR045280 GO:0006355
Prci13g1208 279 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
Prci13g1208 279 CDD ZnF_GATA 219 262 IPR000679 GO:0006355|GO:0043565
Prci13g1208 279 Pfam GATA zinc finger 220 256 IPR000679 GO:0006355|GO:0043565
Prci13g1208 279 MobiDBLite consensus disorder prediction 259 279 - -
Prci13g1208 279 SMART tify_2 77 112 IPR010399 -
Prci13g1208 279 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 264 - -
Prci13g1208 279 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Prci13g1208 279 ProSiteProfiles GATA-type zinc finger domain profile. 214 262 IPR000679 GO:0006355|GO:0043565
Prci13g1208 279 ProSitePatterns GATA-type zinc finger domain. 220 247 IPR000679 GO:0006355|GO:0043565
Prci13g1208 279 Pfam tify domain 80 111 IPR010399 -
Prci13g1208 279 Pfam CCT motif 144 186 IPR010402 GO:0005515
Prci13g1208 279 MobiDBLite consensus disorder prediction 263 279 - -
Prci13g1208 279 SMART GATA_3 214 267 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1208 Prci-Chr13 10301845 10309135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1208 1 275 Tify Gene Family AT1G51600 59.859 1.77e-114 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci13g1208 CCT 1.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1208 - - pvu:PHAVU_008G254600g 397.127