Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1206 ATGTTTCTATGGGATGCTTGGCAAGATCTGACCCTTATCATATTGATTATAGCAGCTGTGGTGTCACTGGCACTAGGAATAAAAACAGAGGGCTTGGAAGAAGGATGGTATGATGGAGGAAGCATTGCCTTTGCTGTTTTTCTTGTCATTATAGTAACAGCTGCCAGTGATTATCGCCAGTCTCTGCAGTTTCAGAATTTGAATTCAGAAAAACAAAATATACAATTGGAGGTCATTAGAGGCGGTAGAGCAACAAAGATATCAATATTTGATGTTATTGTTGGTGATGTTGTACCTCTCAAAATAGGAGACCAGGTTCCTGCTGATGGAGTCATAATCACCGCTCACTCACTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTATTCACAAAGACCACAAATCACCTTTTTTGATGTCTGGCTGCAAAGTAGCAGATGGCGTTGGTGTTATGCTGGTAACTGGGGTTGGTATCAATACAGAGTGGGGATTGTTGATGGCCAGCATCTCTGAAGATACTGGAGAAGAGACTCCGTTGCAGGTGCGATTGAATGGAGTTGCAACTTTTATCGGCATGATAGGTCTTACAGTAGCTGCTGTTGTGCTAGCAGTCCTCTTGGGAAGATACTTTTCTGGCAACACAAAAGATCTAAATGGAAATGTCCAATTTGTTGCTGGCCAGACGAGTATCAGCAGTGCAATTGATGGGGTTGTCAAAATTTTCACTATTGCAGTCACAATTGTGGTTGTTGCAGTTCCTGAAGGTCTTCCTCTAGCTGTTACCCTAACCCTGGCATATTCAATGCGGAAAATGATGGCAGACAAGGCCTTGGTACGAAGGCTTTCAGCTTGTGAAACTATGGGCTGTGCAACAACAATTTGCAGTGATAAAACAGGAACGTTGACCTTGAATCAGATGACTGTGGTTGAGGCATGTGTTGGGAGGAAGAAACTGAATTCACCTGATGACCCATCAAAGTTGAATTCAGAAGTTTTATCTCTGATAAAAGAGGGCATTGCACAGAATACAACTGGAACTGTTTTTGTGCCGAAGGATGGTGGAGAGACTGAGGTTTCAGGGTCTCCTACAGAAAAGGCAATCCTTTCTTGGGCAGTCAAGTTGGGAATGGATTTTGATCTTATCAGATCAAATTCAACAGTTCTCCATGTATTTCCCTTCAATTCTGAGAAGAAGCGAGGTGGTGTCTTGCTGAAGCAGAATGTGGACTCCAGAGTACATATACATTGGAAAGGCGCTGCAGAGATAGTACTAGGAAAATGCACTCAATACATTGATTCAAATGGTTCCTTGCTTTGTATTGAAGAAGAGAAGGACTTTTTCAAGGAAGTTATTGAAGACATGGCTGCTCGCAGTTTGCGGTGTGTTGCCATTGCATACAGGTCATATGAATTGGACAAAGTTCCCTCTAATGAGGAGGATTTGGCCCAGTGGTCCTTACCTGAGGATGAGCTTGTTTTGCTTGCTATAGTTGGCATAAAGGATCCCTGTCGCCCTGGTGTCAAAGATGCAGTGGCAGTATGCACTGCAGCCGGTGTTAAGGTGCGCATGGTTACGGGGGACAATCCTCAAACGGCAAAGGCAATAGCTTTGGAGTGTGGGATACTGGCTTCACATTTAGATGCTGTTGAACCAGTTATCATTGAAGGAAAGACATTCCGGGCATTATCTGAAAAAGAAAGGGAACAAATCGCTAAACAAATAACAGTGATGGGGAGGTCTTCTCCAAATGACAAGCTTTTACTTGTTCAAGCACTGCGTAAAGGGGGTGAAGTTGTTGCTGTTACTGGAGATGGCACCAATGATGCTCCCGCCCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATTTCCGGAACTGAAGTCGCAAAAGAAAGTTCAGATATTATAATCCTGGATGATAACTTTGCGTCAGTTGTAAAGGTCGTCCGCTGGGGCCGTTCTGTCTCTGCAAATATTCAGAAATTTATACAGTTCCAGCTCACAGTTAATGTAGCAGCTCTTGCTATAAATGTTGTGGCGGCAGTTTCTTCGGGTGATGTTCCTTTAAATGCAGTGCAGCTTTTGTGGCTTAACCTTATCATGGACACACTTGGGGCCCTGGCACTAGCAACGGAACCGCCTACGGACCACCTTATGCACAGACCACCCGTTGGTCGAAGGGAACCTCTCATAACGAATAACATGTGGAGGAACTTGCTTGTACAGGCTGTGTATCAAATTGCGGTTCTCCTTGTTCTTAATTTTGGTGGAGAAAGCATTCTCCGTGGTAACAACACCGAAGCAGAAACCATGAAACTGAAGAATACTTTGATTTTCAATGCATTCGTCCTCTGCCAAATATTCAATGAGTTCAATGCTCGAAAACCAGATCAAATAAACGTGTTCACCGGAGTGACCAAGAACCGTCTCTTTGTGGGAATTGTGGGACTGACCTTTGTACTTCAGATAATTATCATCGAGTTCCTTGGAAAGTTCACTAGCACTGTGAGGCTTGATTGGAAGATGTGGCTCGTTTCTTTTATCATTGGTATTGTCAGTTGGCCACTTGCTGTACTTGGAAAGTTCATTCCAGTTCCCAAAACACCGTTGTCCCGTACCTTCAAGAAGATGCTTATGCGATTCAAGAGATCCAAAACTCCTCCCACGCAATAG 2682 0.4374 MFLWDAWQDLTLIILIIAAVVSLALGIKTEGLEEGWYDGGSIAFAVFLVIIVTAASDYRQSLQFQNLNSEKQNIQLEVIRGGRATKISIFDVIVGDVVPLKIGDQVPADGVIITAHSLAIDESSMTGESKIIHKDHKSPFLMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGMIGLTVAAVVLAVLLGRYFSGNTKDLNGNVQFVAGQTSISSAIDGVVKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGCATTICSDKTGTLTLNQMTVVEACVGRKKLNSPDDPSKLNSEVLSLIKEGIAQNTTGTVFVPKDGGETEVSGSPTEKAILSWAVKLGMDFDLIRSNSTVLHVFPFNSEKKRGGVLLKQNVDSRVHIHWKGAAEIVLGKCTQYIDSNGSLLCIEEEKDFFKEVIEDMAARSLRCVAIAYRSYELDKVPSNEEDLAQWSLPEDELVLLAIVGIKDPCRPGVKDAVAVCTAAGVKVRMVTGDNPQTAKAIALECGILASHLDAVEPVIIEGKTFRALSEKEREQIAKQITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVSANIQKFIQFQLTVNVAALAINVVAAVSSGDVPLNAVQLLWLNLIMDTLGALALATEPPTDHLMHRPPVGRREPLITNNMWRNLLVQAVYQIAVLLVLNFGGESILRGNNTEAETMKLKNTLIFNAFVLCQIFNEFNARKPDQINVFTGVTKNRLFVGIVGLTFVLQIIIIEFLGKFTSTVRLDWKMWLVSFIIGIVSWPLAVLGKFIPVPKTPLSRTFKKMLMRFKRSKTPPTQ 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1206 893 PRINTS P-type cation-transporting ATPase superfamily signature 121 135 - -
Prci13g1206 893 PRINTS P-type cation-transporting ATPase superfamily signature 605 624 - -
Prci13g1206 893 PRINTS P-type cation-transporting ATPase superfamily signature 498 509 - -
Prci13g1206 893 PRINTS P-type cation-transporting ATPase superfamily signature 520 530 - -
Prci13g1206 893 PRINTS P-type cation-transporting ATPase superfamily signature 629 641 - -
Prci13g1206 893 PRINTS P-type cation-transporting ATPase superfamily signature 297 311 - -
Prci13g1206 893 Pfam haloacid dehalogenase-like hydrolase 294 619 - -
Prci13g1206 893 Gene3D - 616 870 - -
Prci13g1206 893 PRINTS Sodium/potassium-transporting ATPase signature 417 435 - -
Prci13g1206 893 PRINTS Sodium/potassium-transporting ATPase signature 290 311 - -
Prci13g1206 893 PRINTS Sodium/potassium-transporting ATPase signature 40 60 - -
Prci13g1206 893 FunFam Calcium-transporting ATPase 498 650 - -
Prci13g1206 893 Gene3D - 152 311 - -
Prci13g1206 893 SFLD p-type atpase 279 657 IPR044492 -
Prci13g1206 893 Pfam Cation transporting ATPase, C-terminus 690 865 IPR006068 -
Prci13g1206 893 FunFam Calcium-transporting ATPase 5 62 - -
Prci13g1206 893 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 868 IPR023298 -
Prci13g1206 893 NCBIfam HAD-IC family P-type ATPase 232 326 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci13g1206 893 NCBIfam HAD-IC family P-type ATPase 571 685 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci13g1206 893 SUPERFAMILY Calcium ATPase, transduction domain A 75 170 IPR008250 -
Prci13g1206 893 SUPERFAMILY HAD-like 295 710 IPR036412 -
Prci13g1206 893 PANTHER CATION TRANSPORTING ATPASE 2 868 - -
Prci13g1206 893 Gene3D - 312 505 IPR023299 GO:0000166
Prci13g1206 893 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 304 502 IPR023299 GO:0000166
Prci13g1206 893 ProSitePatterns E1-E2 ATPases phosphorylation site. 299 305 IPR018303 -
Prci13g1206 893 NCBIfam calcium-translocating P-type ATPase, PMCA-type 2 868 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Prci13g1206 893 Gene3D - 53 151 - -
Prci13g1206 893 FunFam Calcium-transporting ATPase 307 505 - -
Prci13g1206 893 FunFam Calcium-transporting ATPase 622 870 - -
Prci13g1206 893 FunFam Calcium-transporting ATPase 9 plasma membrane-type 151 321 - -
Prci13g1206 893 SFLD C1.7: P-type atpase like 279 657 - -
Prci13g1206 893 FunFam Calcium-transporting ATPase 54 173 - -
Prci13g1206 893 Pfam E1-E2 ATPase 74 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1206 Prci-Chr13 10257536 10269393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1206 1 889 Primary Pumps ATPases AT3G21180 78.989 0.0 1409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1206 K01537 - gmx:100777143 1459.51