Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1118 ATGGATTATTCATCATGGATTAACAGTTCCTTGGACCTCAACCTCAACCCTGATTCCAGAGTTAGTGAAGAGATTCCTAAAAGGGAGCTGGAAAGCAACTTTTTTTCATTGGACTTGAAGTCGTCTCCTGCAAGACAGGAGACAAGTGGTAATCTGGAGGAGGAATTGAAGAGGGTGAGTGCAGAGAACAAGAAGCTGACTGAAATGCTGACAGAGATGTGTGAGAACTACAACACTTTGAAGAACCATGTGTCTGAATATATGAGGAAGAACAACAATTCGGGGAAGGAGATGAGCCCACCAAAGAAAAGGAAGTCAGAAACCAGCAATAATAGCAATCCAATTAGGGCTTATGGAAACAACTCTGAGAGCAGCTCTACTGATGAAGAATCAAGCAAGAAACCAAGGCAAGAGATCATCAAAGCAAAAATCACTAAAGCTTATTTCAGAACACCAGCATCTGATACAAGCCTTATTGTGAAAGATGGATATCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCAAGAGCATACTTCAAATGCTCTTTTGCTCCCTCATGCCCTGTCAAAAAGAAGGTCCAAAGAAGTGTGGATGATCAGTCCATTGTTGTGGCAACATATGAAGGAGAGCACAATCATCCACAGCCTTCTCAAATGGAGACCACAGCATCCGGTTCTAGCCGAGGCATGACACATGGCATAGCACCTAGTTCATCTTCTCTGAGGCATTCTCCTCCTAAAGTTGACATGTCAAGATCTAAGTCCTTCAATGAATCCACAAACTCTATACCGAAGCTCGATTCGTCAGAAGTCCCACAGGTTTTGGTGGAACAGATGGCTTCCTCATTAACCAAGGATCCAAATTTTAGATCAGCACTCCTTGCAGCCATTTCAGGAAGAATGTCGCACAAGAATTAG 933 0.4309 MDYSSWINSSLDLNLNPDSRVSEEIPKRELESNFFSLDLKSSPARQETSGNLEEELKRVSAENKKLTEMLTEMCENYNTLKNHVSEYMRKNNNSGKEMSPPKKRKSETSNNSNPIRAYGNNSESSSTDEESSKKPRQEIIKAKITKAYFRTPASDTSLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSIVVATYEGEHNHPQPSQMETTASGSSRGMTHGIAPSSSSLRHSPPKVDMSRSKSFNESTNSIPKLDSSEVPQVLVEQMASSLTKDPNFRSALLAAISGRMSHKN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1118 310 MobiDBLite consensus disorder prediction 105 126 - -
Prci13g1118 310 SUPERFAMILY WRKY DNA-binding domain 156 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci13g1118 310 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 41 307 IPR044810 GO:0003700
Prci13g1118 310 FunFam WRKY transcription factor 40 145 222 - -
Prci13g1118 310 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci13g1118 310 MobiDBLite consensus disorder prediction 90 136 - -
Prci13g1118 310 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Prci13g1118 310 Gene3D WRKY domain 144 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Prci13g1118 310 MobiDBLite consensus disorder prediction 39 58 - -
Prci13g1118 310 Coils Coil 49 76 - -
Prci13g1118 310 MobiDBLite consensus disorder prediction 216 270 - -
Prci13g1118 310 MobiDBLite consensus disorder prediction 213 270 - -
Prci13g1118 310 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1118 Prci-Chr13 9553965 9555837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1118 4 310 WRKY Transcription Factor Family AT1G80840 49.843 4.02e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Prci13g1118 WRKY 2.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1118 - - gmx:100798375 406.757