Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1116 ATGGCCCGGGTGATGAACGAGCATCCGAACCAGGACGACTCGCCCAGGAGCATTCTGTTCAACAAGTACGAGATGGGGAGGCTTCTGGGTCAGGGAAACTTCGCCAAGGTGTATTACGCTAGGAACCTTGTGACCAGCGAGAGCGTCGCCGTTAAGGTCATCAAGAAAGAGAAACTCAAGAAAGAGAGGCTCGTGAGGCAGATCAAGCAGGAGGTTTCTGTGATGCGGTTGGTCCGGCACCCTAACATCGTCGAGCTCAAGGAGGTCATGGCCACCAGAGGAAAGATCTTTCTGGTAATGGAGTATGTCAGAGGTGGTGAGTTGTTCTCCAAGGTTGCGAAAGGCAAGCTTAAGGAAGACGTTGCCAGAAAATATTTCCAGCAATTGATAAGCGCCATTGATTTCTGTCATAGCCGTGGAGTCACGCACCGTGATCTGAAGCCTGAGAATCTTCTTTTGGACGAGAACGAAGATCTCAAGGTTTCCGATTTTGGGTTGTCGGCGTTGCCGGAGCAGCGCCGATCCGACGGAATGCTCCTGACTCCGTGTGGAACGCCGGCTTATGTGGCGCCCGAGGTGCTGAAGAAGAAAGGGTACGATGGATCCAAAGCTGATATTTGGTCATGCGGCGTGATTCTCTATGCTCTGCTTTCTGGGTATCTGCCATTTCCGGGCGATAATGTTATGAAGATTTACAAGAAAGCATTCAAAGCTGAGTACGAATTCCCAGATTGGATTTCATCAGGAGCTAAGAATTTGATCTCTAATCTTCTAGTCGCCGACCCAGAAAAAAGATATTCGATCCCAGATATCATGAAGGACCCGTGGTTTCAAATCGGGTTCATGAGACCAATCGCGTTTTCGATAAAGAAGGAACCAGGTTTCGATTTCGACGAGGAAGAGAATGAAGCTAATGATAAACAAGAAGGAGAAGCGTTGATAAGATCAGAGAATAAGCCATCTCGACCATTTTACAATGCGTTTGAGATAATCTCATCTTTGTCAAATGGGTTCGATCTAAGGAGCTTATTCGAGACACGAAAGAGATCTCCGTCATTGTTCCTGTCGAAGCTTTCAGCTCCGACGGTGGTGGCGAAGCTAGAGACGGTGGCGAAGAAGCTGAACTTTAAGATCACAGGGAGGAAGGATTTCAAGGTGAGGATGCAGGGAGAAACAGAGGGAAGGAAAGGGAAGCTGGCCATGACGGTGGAGGTGTTCGAGGTGGCGCCGGAGGTGGCGGCGGTGGAATTCTCCAAGTCGGCCGGCGATACACTCGAATACATAAAGTTCTGTGAGGAAGAAGTGAGACCTGCACTGAAAGACATAGTATGGAGCTGGCAAGGAGATAGTACTAATAATAGTAGTCTTCAAAATTAA 1377 0.4858 MARVMNEHPNQDDSPRSILFNKYEMGRLLGQGNFAKVYYARNLVTSESVAVKVIKKEKLKKERLVRQIKQEVSVMRLVRHPNIVELKEVMATRGKIFLVMEYVRGGELFSKVAKGKLKEDVARKYFQQLISAIDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLSGYLPFPGDNVMKIYKKAFKAEYEFPDWISSGAKNLISNLLVADPEKRYSIPDIMKDPWFQIGFMRPIAFSIKKEPGFDFDEEENEANDKQEGEALIRSENKPSRPFYNAFEIISSLSNGFDLRSLFETRKRSPSLFLSKLSAPTVVAKLETVAKKLNFKITGRKDFKVRMQGETEGRKGKLAMTVEVFEVAPEVAAVEFSKSAGDTLEYIKFCEEEVRPALKDIVWSWQGDSTNNSSLQN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1116 458 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g1116 458 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g1116 458 FunFam Non-specific serine/threonine protein kinase 320 444 - -
Prci13g1116 458 Gene3D Transferase(Phosphotransferase) domain 1 16 328 - -
Prci13g1116 458 FunFam Non-specific serine/threonine protein kinase 15 102 - -
Prci13g1116 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Prci13g1116 458 Pfam NAF domain 324 379 IPR004041 GO:0007165
Prci13g1116 458 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 440 - -
Prci13g1116 458 FunFam Non-specific serine/threonine protein kinase 16 319 - -
Prci13g1116 458 SUPERFAMILY Protein kinase-like (PK-like) 19 278 IPR011009 -
Prci13g1116 458 ProSitePatterns Protein kinases ATP-binding region signature. 29 56 IPR017441 GO:0005524
Prci13g1116 458 ProSiteProfiles NAF domain profile. 320 345 IPR018451 GO:0007165
Prci13g1116 458 Gene3D Kinase associated domain 1, KA1 329 445 - -
Prci13g1116 458 CDD CIPK_C 326 440 - -
Prci13g1116 458 SMART serkin_6 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1116 Prci-Chr13 9503228 9505258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1116 16 455 CBL-interacting serine-threonine protein kinases AT5G10930 62.670 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Prci13g1116 Pkinase 5.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1116 - - gmx:100812424 682.559