Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1109 ATGGACCTTCAAAGATCAGAGCCATGTTCATCTGAAAATTTGATTCTCTCATTTTCAGATGTTCCAGCATGCCCAAAACCCACAATGGATAGCCAAACTGAGAAGAGAAACACACGAAAAGAAGATCAAAAACACCCACATGGCTCAGCTCCTCCTCTTCCACTGAATCTAAATCTCTCAAGCGAGGATTCAGCGGATGGATCAAAGCCAGAACTCAACCTCATCAATTGTTTTGATGCCAAGTCGTCCTTAAACTCCTCAGAATCTTCTCATGACCTGGAACCCCGGATTTTCTCATGCAACTACTGCCAGAGAAAATTTTATAGTTCGCAGGCCCTTGGAGGACACCAGAATGCACACAAACGTGAGAGGACTTTGGCAAAAAGGGGACATAAAGTTGGAGCTGCAATTTCAGTAGAATTTGGACAGAGGTACACTAGTATGGCTTCCCTGCCCTTGCATGGCTCATATAACAGATCACTTGGGATTCAAGCACATTCTATGATTCATAAGCCCTCTTATCCAGCTCCTACTCCTGCTTTACCGTGTTTCCATGGTCAAAATGCATGGTGGAGGCAGCCTTTAGATTCACAGCCAGCAATTGGGAAGCTCCCATCCGGAAAGGTTCATATTGGAGATGAAACTGAAGCTTCCTTTTCTGGTGGAGTTTCGAGGTTAGCGAAGTTTTCTCCAAATATGGTGTTGAAAGAGGGAATTGGAGCTTACTGGTTGGGAAGTGTTACTCATGTAAAATCTAAACAAGAGGAGTTACAGAAGCTAGACTTGTCCCTCAAACTCTAA 801 0.4395 MDLQRSEPCSSENLILSFSDVPACPKPTMDSQTEKRNTRKEDQKHPHGSAPPLPLNLNLSSEDSADGSKPELNLINCFDAKSSLNSSESSHDLEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKVGAAISVEFGQRYTSMASLPLHGSYNRSLGIQAHSMIHKPSYPAPTPALPCFHGQNAWWRQPLDSQPAIGKLPSGKVHIGDETEASFSGGVSRLAKFSPNMVLKEGIGAYWLGSVTHVKSKQEELQKLDLSLKL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1109 266 FunFam Zinc finger protein 2 77 144 - -
Prci13g1109 266 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
Prci13g1109 266 MobiDBLite consensus disorder prediction 32 47 - -
Prci13g1109 266 Gene3D Classic Zinc Finger 76 145 - -
Prci13g1109 266 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Prci13g1109 266 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 266 IPR044246 GO:0009788
Prci13g1109 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Prci13g1109 266 MobiDBLite consensus disorder prediction 20 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1109 Prci-Chr13 9363601 9364841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1109 49 266 C2H2 Transcription Factor Family AT5G25160 44.304 5.26e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci13g1109 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1109 - - qsa:O6P43_017957 304.293