Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1104 ATGGCCAGACCCCAACAACGCTATCGAGGCGTCCGCCAGAGGCACTGGGGCTCCTGGGTCTCCGAAATCCGCCACCCTCTTCTGAAGACAAGAATATGGCTGGGGACGTTCGAAACGGCGGAAGATGCAGCCAGAGCCTACGACGAAGCAGCGAGGCTGATGTGTGGGACTAAGGCACGAACCAATTTCCCGTACAATCCCAACGAGCCACAGTCATCTTCCTCAAAGTATCTCTCTGCAACTTTGACGGCCAAGCTTCACAAGTGTCACATGGCCTCGCTCTCTCTTCAAATGGCCAATAAGCAGAAACAGCCTCAGCAGCAACAACAAACACAGAGGCCTCATCACTCTGATACTTTTTGTAACAGCCCATTTACTTCCTCCGGCAATGCCATTGCCGGAACGAGCTCCGACTCTGGATTCCGGTGGCCGGAGATGAGGCCGGAGGAGTCCCAGTGGGTGGTCGAAGGCCAAAGCGAAGAAGTTGGACCAGTTCTTGAAGATGATCACATAGAACAGATGATTCAGGAATTGCTTCATTGTGGCTCCATTGAACTCTGCTCTCTTGGCTCAGCCTAG 579 0.5337 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTKARTNFPYNPNEPQSSSSKYLSATLTAKLHKCHMASLSLQMANKQKQPQQQQQTQRPHHSDTFCNSPFTSSGNAIAGTSSDSGFRWPEMRPEESQWVVEGQSEEVGPVLEDDHIEQMIQELLHCGSIELCSLGSA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1104 192 MobiDBLite consensus disorder prediction 98 143 - -
Prci13g1104 192 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Prci13g1104 192 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Prci13g1104 192 MobiDBLite consensus disorder prediction 98 137 - -
Prci13g1104 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 135 - -
Prci13g1104 192 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Prci13g1104 192 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Prci13g1104 192 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Prci13g1104 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Prci13g1104 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Prci13g1104 192 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Prci13g1104 192 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1104 Prci-Chr13 9310389 9311268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1104 1 189 AP2-EREBP Transcription Factor Family AT5G25190 59.259 1.73e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci13g1104 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1104 - - qsa:O6P43_017963 267.7