Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1100 ATGAACGACCATTTCCTCTTCCTGTCTGATCCCACAAGACCATGCAGCGGCTGGGTTTCCACTACAGATGCGCCACCTTCACCCCCGCCTCTTGAGGGAATCGCTGCCGTGGTGGGTCAGCACGTTCTCTTTGGTCACAACCCCACAACAATCTCCGGCACCACTAATAATAACAACGACAACAACGACCTTAATGGTTCCAAAGGTTTCACGTCGGTGCAGAAGCGAGCAGACAAGAGTGCAGCTGGTGGGATTCTGTCGGTGAACAAGACGTACAGGGGAGTGAGGAAGAGGCCGTGGGGGAGGTGGTCGGCGGAGATACGCGACCGAATCGGTCGGTGCCGGCACTGGCTGGGAACGTTCGACACGGCGGAGGAGGCAGCCCGTGCGTACGACGCCGCTGCGAGGCGACTGAGAGGCGCGAAGGCGAGAACCAACTTCGAGATACCTTCAGTGCTGCCATTGTCGTCACCTTCTTCATCGTCTGCAAATTCAATCTCAGAAGTGAAAAGCAAGGGAAAGACTTTGGTTAATCACAAGAAATGCTGCGTGGTTAACTCTGTGTCTCAGTTGTTCAGTGGGGTGCCGGAGATTGTGAGAGAGAATGATCGCAGTGAGAAAATTAGTTCAGGTTTTGGTAATAATCTGGAACTAGACTTGAAGCTTGGTGTGGACTTCGGAGGTAGAACCACTAGAATGGTCATGTAG 708 0.5325 MNDHFLFLSDPTRPCSGWVSTTDAPPSPPPLEGIAAVVGQHVLFGHNPTTISGTTNNNNDNNDLNGSKGFTSVQKRADKSAAGGILSVNKTYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFEIPSVLPLSSPSSSSANSISEVKSKGKTLVNHKKCCVVNSVSQLFSGVPEIVRENDRSEKISSGFGNNLELDLKLGVDFGGRTTRMVM 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1100 235 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 67 169 - -
Prci13g1100 235 Gene3D AP2/ERF domain 90 149 IPR036955 GO:0003700|GO:0006355
Prci13g1100 235 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Prci13g1100 235 FunFam Ethylene-responsive transcription factor 2 90 149 - -
Prci13g1100 235 Pfam AP2 domain 92 140 IPR001471 GO:0003700|GO:0006355
Prci13g1100 235 SUPERFAMILY DNA-binding domain 91 148 IPR016177 GO:0003677
Prci13g1100 235 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Prci13g1100 235 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Prci13g1100 235 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Prci13g1100 235 Coils Coil 124 144 - -
Prci13g1100 235 CDD AP2 92 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1100 Prci-Chr13 9226235 9227154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1100 83 200 AP2-EREBP Transcription Factor Family AT1G12980 46.610 3.45e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci13g1100 AP2 4.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1100 - - pcin:129290286 410.223