LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g1030	ATGGGAGAAGTAAAGGACAACGAAGCCTACGAGGAGGAGCTCATCGACTACGAAGAGGAAGATGAAAAAGCCACCGACGCTGTCTCGGGCAAAGATGGTACCGAATCCGGGAAGAAGGGTTATGTTGGGATTCACAGTTCGGGATTTCGAGACTTCCTATTGAAACCAGAACTTCTTCGAGCCATCGTGGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCTATTTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCAACACTTCAGCAAATTGATCCTGTTCCTGGTCAAGTTGCGGCTCTTGTTCTTTGCCACACTAGAGAACTAGCTTATCAGATATGCCATGAATTTGAGAGGTTTAGCACATATCTTCCCGAAATAAAAGTTGCTGTTTTCTATGGTGGGGTCAATATCAAGGTTCATAAAGAATTGCTTGCAAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGCGGATATTAGCCCTGACTAGAGATAAGGATCTTAGCTTAAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTTGAATCACTTGACATGAGAAGAGATGTGCAAGAAATTTTCAAATTGACTCCCCATGATAAACAAGCAATGATGTTTTCGGCCACACTCAGTAAAGAAATACGCCCTGTTTGCAAGAAATTTATGCAAGATCCTATGGAGATTTATGTAGATGATGAGGCTAAATTGACTCTTCATGGTTTAGTACAGCACTACATCAAATTGAAGGAGGCAGAGAAGAGCCGTAAGTTGAATGATCTTCTTGATGCCCTGGACTTCAACCAAGTGGTCATTTTTGTCAAAAGTGTCAGCAGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAGTGCAACTTTCCATCAATCTGCATACATTCAGGAATGTCACAAGAAGAAAGATTGAAACGATACAAGGGATTCAAGGAAGGGAAGCAGAGAATTCTTGTGGCAACTGATTTAGTAGGAAGGGGAATTGATATAGAACGTGTTAATATTGTTATCAACTATGACATGCCAGATTCGGCTGATACTTACCTTCACAGGGTGGGAAGAGCTGGTAGGTTTGGCACCAAGGGTCTTGCTATCACGTTTGTGTCTTCTTCCTCTGATTCTGATGTTCTTAATCAGGTGCAGTCAAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAGCAAATCGACACTTCCACATATATGCCCAGCTGA	1287	0.4204	MGEVKDNEAYEEELIDYEEEDEKATDAVSGKDGTESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPEIKVAVFYGGVNIKVHKELLANECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQAMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEAEKSRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSSDSDVLNQVQSRFEVDIKELPEQIDTSTYMPS	428

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g1030	428	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	78	251	IPR014001	-
	Prci13g1030	428	MobiDBLite	consensus disorder prediction	9	23	-	-
	Prci13g1030	428	CDD	SF2_C_DEAD	264	392	-	-
	Prci13g1030	428	Gene3D	-	43	259	IPR027417	-
	Prci13g1030	428	MobiDBLite	consensus disorder prediction	1	34	-	-
	Prci13g1030	428	FunFam	DEAD-box ATP-dependent RNA helicase	260	428	-	-
	Prci13g1030	428	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	47	75	IPR014014	GO:0003724
	Prci13g1030	428	SMART	helicmild6	303	384	IPR001650	-
	Prci13g1030	428	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	116	401	IPR027417	-
	Prci13g1030	428	Gene3D	-	260	427	IPR027417	-
	Prci13g1030	428	SMART	ultradead3	66	267	IPR014001	-
	Prci13g1030	428	Coils	Coil	7	27	-	-
	Prci13g1030	428	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	45	402	-	-
	Prci13g1030	428	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	279	424	IPR001650	-
	Prci13g1030	428	CDD	DEADc_DDX39	46	253	-	-
	Prci13g1030	428	Pfam	DEAD/DEAH box helicase	72	237	IPR011545	GO:0003676\|GO:0005524
	Prci13g1030	428	FunFam	DEAD-box ATP-dependent RNA helicase 56-like	35	253	-	-
	Prci13g1030	428	Pfam	Helicase conserved C-terminal domain	278	384	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g1030	Prci-Chr13	8605157	8613527	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g1030	1	428	Eukaryotic Initiation Factors Gene Family	AT5G11200	82.303	0.0	752

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g1030	K12812		-	qsa:O6P43_018035	793.497