LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g1006	ATGGGGGTGGGGGGAAATTTCTGGGATTTGCTAAAGCCATACGCACGAGACGAAGGTTTGGATTTCTTAAGGGACAAGCGAGTCGCCGTGGACCTCTCCTTCTGGATCATCCAGCATCAGACTGCTATCAAGGCCCATGCTCGGAAACCCCATCTGCGACTCACCTTCTTTCGCACTATCAATCTCTTCTCCAAGTTTGGAGCATATCCAGTCTTCGTGGTAGATGGGACCCCATCGCCGTTGAAATCGCAAGCTAGGATTTCAAGATTTTTCCGTTTTTCTGGCATTGAACTAACAGATTTTCCGGTGGGTGAAGAAAGTGTTCCCGTTGAGAGGAACCGTGAATTTTCAAGACGTGTTAAAGAATGTGTGGAACTTGTTGAGCTACTCGGAATGCCTGTACTATATGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTATGTGGATGCTTGCATTACATCTGACAGTGATGCATTCCTATTCGGTGCGAAATGTGTCATAAAAGCTTCTGCTCTAATGCTAAAGTAAGAAGCGTTTGAATGCTACAATATGGAAGATATTGAATCTGGTCTTGGGTTGAAGAGGAAACACCTCATAGCTATTTCTCTTCTTGTTGGAAATGATCATGATTTAACAGGTGTTCAAGGGATTGGGCTTGATACGGCTCTTCGTTTTGTTAGTTGTTTTAGTGAAGCAGATGTATTGAATAGATTGCAAGAGATTGGCAATGGGAAAGTTTCTCCCACCGGCATTAAATCTGCTGAAGATTGTGTTGACATGGATGGGAACTTTCCAAGCCATAAACAGCTTCACTGTTCCTTTTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAAATCTCCTTGTGAATTTTGCAGTGCAAATGATAATGAAGGTTGCTTGAGAAAACCAGAGGGTTTTACTTGCGGTTGCCCTTCCTGTGATATGCTTAGGAAACGAAAGGCACAGAGAAGGATGGAAAATTGGCACACAAAAATTTGTCTCAAGATTGCAAAGGAGCCCAAGTTTCCCAGAGATGAAATCATTGAAATGTACTTCTGCAATGACAATGGTTGCCACTCTGCAAGTGATGGTCCTTGCATCTCATGGAGTAGACCAAAGATTGAGATGCTGATAGATTTTTTAAACTTTCATCAGCATTGGGATCCGGCTTACATTCGAAAGCAGATTTTTCCTATGATGTCTACCATCTTTTTGAGAGACATGGCTAATACTCCTGTAGAAAGTCTCGTATTTGGGACATTTGAGTTTGATTCAATACAACGTGTGAAGATAAGATATGGATATCAATTTTATGTTGTCAAGTGGAAATGTGCAGTTGGCAACATTAGTTGTACAGTTCCATCACACGAATCTAGCATGCAACAAGCAGATGGTAGTGAGATTGATGATTTTGTGGATCTACTAGATGATTCTAGTGTCTCTGATATGAGTGATGGTTGTAGCTTCCTATTGACAGATGAAAATATGGATCTTGTGAGGGCTGCATTTCCAGCAAAAGTTGAAGGGTTTTGGCAAGAACAGGAATTGAAGGGATTGAAAATAAGAAAAGCTTCTACCCCGCAATCTCTAGAGAATGAGAATTCATCACCATTGAACACAAGAAGCACTCAACTAAGCATTACAAAGTTCTACCGCTCAGTGAAAACGCAAAATCATTCAAAACAGGAAGAGGCATCTGATAGCTTTGATAACCTTGATGGTGGGACCTCAAAAGGGAAAAGAACGATGTCCAGTCCAAATCTAACGAAATCAGCGAGGCGTCGCCTTTTATTTAAGTAG	1821	0.4174	MGVGGNFWDLLKPYARDEGLDFLRDKRVAVDLSFWIIQHQTAIKAHARKPHLRLTFFRTINLFSKFGAYPVFVVDGTPSPLKSQARISRFFRFSGIELTDFPVGEESVPVERNREFSRRVKECVELVELLGMPVLYAKGEAEALCAQLNSEGYVDACITSDSDAFLFGAKCVIKASALMLKXEAFECYNMEDIESGLGLKRKHLIAISLLVGNDHDLTGVQGIGLDTALRFVSCFSEADVLNRLQEIGNGKVSPTGIKSAEDCVDMDGNFPSHKQLHCSFCGHPGSKRDHMKSPCEFCSANDNEGCLRKPEGFTCGCPSCDMLRKRKAQRRMENWHTKICLKIAKEPKFPRDEIIEMYFCNDNGCHSASDGPCISWSRPKIEMLIDFLNFHQHWDPAYIRKQIFPMMSTIFLRDMANTPVESLVFGTFEFDSIQRVKIRYGYQFYVVKWKCAVGNISCTVPSHESSMQQADGSEIDDFVDLLDDSSVSDMSDGCSFLLTDENMDLVRAAFPAKVEGFWQEQELKGLKIRKASTPQSLENENSSPLNTRSTQLSITKFYRSVKTQNHSKQEEASDSFDNLDGGTSKGKRTMSSPNLTKSARRRLLFK	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g1006	606	SUPERFAMILY	PIN domain-like	6	214	IPR029060	-
	Prci13g1006	606	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	70	89	IPR006084	-
	Prci13g1006	606	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	148	168	IPR006084	-
	Prci13g1006	606	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	204	219	IPR006084	-
	Prci13g1006	606	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	127	144	IPR006084	-
	Prci13g1006	606	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Prci13g1006	606	Pfam	XPG I-region	131	214	IPR006086	GO:0004518
	Prci13g1006	606	Gene3D	-	5	198	-	-
	Prci13g1006	606	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	199	413	IPR036279	-
	Prci13g1006	606	MobiDBLite	consensus disorder prediction	576	598	-	-
	Prci13g1006	606	FunFam	Flap endonuclease GEN-like 1	199	255	-	-
	Prci13g1006	606	SMART	xpgn3	1	96	IPR006085	GO:0004518
	Prci13g1006	606	SMART	xpgineu	128	199	IPR006086	GO:0004518
	Prci13g1006	606	MobiDBLite	consensus disorder prediction	563	602	-	-
	Prci13g1006	606	CDD	PIN_GEN1	2	203	-	-
	Prci13g1006	606	FunFam	Flap endonuclease GEN-like 1	2	198	-	-
	Prci13g1006	606	Pfam	XPG N-terminal domain	1	86	IPR006085	GO:0004518
	Prci13g1006	606	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	551	IPR006084	-
	Prci13g1006	606	Gene3D	-	199	262	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g1006	Prci-Chr13	8439013	8445317	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g1006	26	232	Core DNA Replication Machinery Family	AT5G26680	29.258	3.06e-14	73.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g1006	K15338		-	gmx:100791251	794.653