Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0902 ATGACCAAAATTTTTCTACTCCTCCTTTTCTCACAACTCAATCAACCTGGCTCTTCCGAATCCGAAGCCATTACCGTTTACTGGGGTCTGAATGGTGATGAGGGTAATCTTACAGAAACGTGTGCTACAGGAAAATACTCTTTTGTAGTGATTGGCTTCCTTTGGAGGTTTGGGAATGGCGAAACCCCTCGGCTCAACCTCGCCGATCACTGTGACCCTTCTTTATCTGGGTGCACCACCATGGGCAGTGAGATCAAATATTGTCAAGAACAAGGAGTCAAGGTGATGCTCTCTCTTGGAGGAGGATCTGCGAAATACTCTTTATCTTCCTCTGAGGATGCTCAAAATGTTTCTGATTACTTATGGAGAAACTTCTTAGGTGGAAGCTCATCTTCTCGCCCACTTGGAGATGCCGTATTGGATGGCATAGATTTTGATATAGAGTCATCTACCCCACACTTGGAGGACCTTGCACGTTACCTTAAGTCACACAGCACTGATAGCCAAAAAGTGTACCTATCTGCAGCTCCTCAATGCCCATTTCCTGATGCTAATCTTGGGACTGCCCTTAATACAGGCCTTTTTGATCATGTCTGGGTACAATTCTTCAACAACCCTCCCTGCGATTATTCAGAATCCAATACTGATGCGTTTGTCAATGCGTGGCACCAATGGGCGACATCATTAAATGGGTCGAAAATATTCCTGGGGTTGCCAGCATCTCAGGAAATAGCAGCCAGTGGCTATGTTCCTGCTGATTTGTTAACCTCTAAGGTACTTCCCGCTGTAAGGAAGTCAGCTAACTATGGAGGTGTAATGTTGTGGTCAAGGTACGAAGATAGATTGAGTGGATACAGTACGTACCTTCAGATTGGTCCTCTTTGCACACCCCAAAGCACTCCCAAATGCAGGAAACATGACAGTGGCTTTATAGAGCGTTTTGGTTACATGTCCACTGGTAGCATCAAGGTTTACGAAAGTGAGAATCTTGGTAGGCAGTGTTGTGGGATCATATGCTGGAATAATTGTTCTTGTGAGGCTTATGCACCAGTGAATCAGGTTAACAATACTGGATGCCAGATATGGCTTAAAGGAACCAGGTTCACTGAAGCTGCAGGAGAAAAAGCACAGTCAATTTATATTGTTAGAGCCAAAGTAAACAGGTGGTGGATATGGCTTATCATTGCAGTGGGAGCAAGTCTAGCATTACCTCTGATCTGCTACTTATGCTATGCCTTATTGAGAAAATACAAAGCAGAAGTGGATAGAAAAACAAAGCAAGAGAAGATATTACATGAAATTGGAGGCAATGCAATGATTTCCATGGTGTATGGCAAACCTAAAAGGAACAAGAAACATGGGAAGGAAAGAAATGAGGTTGAAATATTCAGTTTCGAGGGCATTGTGGTTGCCACAAACAATTTCTCAGATTCAAACAAGCTAGGAGAGGGTGGTTTTGGTCCTGTATATAAGGGGACACTAACCGATGGGCAGGAAGTAGCAATAAAACGACTTTCTAAAAGCTCTGGACAAGGGCTTACAGAATTCAAGAATGAGGCTAAACTCATGGCAAAATTGCAGCATACTAATCTTGTGAGGCTTTTGGGGTTTTGCATCCAAAGAGATGAAAGAATATTAGTTTATGAATGCAAGCAGAAGAAATGTACTAGATTGGGAGAAACGCTTTAG 1689 0.4304 MTKIFLLLLFSQLNQPGSSESEAITVYWGLNGDEGNLTETCATGKYSFVVIGFLWRFGNGETPRLNLADHCDPSLSGCTTMGSEIKYCQEQGVKVMLSLGGGSAKYSLSSSEDAQNVSDYLWRNFLGGSSSSRPLGDAVLDGIDFDIESSTPHLEDLARYLKSHSTDSQKVYLSAAPQCPFPDANLGTALNTGLFDHVWVQFFNNPPCDYSESNTDAFVNAWHQWATSLNGSKIFLGLPASQEIAASGYVPADLLTSKVLPAVRKSANYGGVMLWSRYEDRLSGYSTYLQIGPLCTPQSTPKCRKHDSGFIERFGYMSTGSIKVYESENLGRQCCGIICWNNCSCEAYAPVNQVNNTGCQIWLKGTRFTEAAGEKAQSIYIVRAKVNRWWIWLIIAVGASLALPLICYLCYALLRKYKAEVDRKTKQEKILHEIGGNAMISMVYGKPKRNKKHGKERNEVEIFSFEGIVVATNNFSDSNKLGEGGFGPVYKGTLTDGQEVAIKRLSKSSGQGLTEFKNEAKLMAKLQHTNLVRLLGFCIQRDERILVYECKQKKCTRLGETL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0902 562 PANTHER ENDOCHITINASE 8 289 - -
Prci13g0902 562 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 441 550 - -
Prci13g0902 562 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 140 148 IPR001579 GO:0004553|GO:0005975
Prci13g0902 562 Pfam PAN-like domain 328 364 IPR003609 -
Prci13g0902 562 SUPERFAMILY (Trans)glycosidases 20 288 IPR017853 -
Prci13g0902 562 Pfam Protein tyrosine and serine/threonine kinase 478 551 IPR001245 GO:0004672|GO:0006468
Prci13g0902 562 SUPERFAMILY Protein kinase-like (PK-like) 460 550 IPR011009 -
Prci13g0902 562 Gene3D Phosphorylase Kinase; domain 1 448 550 - -
Prci13g0902 562 FunFam Acidic endochitinase SE2 22 291 - -
Prci13g0902 562 Gene3D Glycosidases 23 291 - -
Prci13g0902 562 CDD GH18_hevamine_XipI_class_III 24 289 IPR045321 -
Prci13g0902 562 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 22 292 IPR001223 GO:0005975
Prci13g0902 562 Pfam Glycosyl hydrolases family 18 24 280 IPR001223 GO:0005975
Prci13g0902 562 ProSiteProfiles Protein kinase domain profile. 475 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0902 Prci-Chr13 7538609 7541454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0902 5 287 Glycoside Hydrolase AT5G24090 57.042 5.78e-122 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci13g0902 Glyco_hydro_18 2.2e-25 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0902 K01183 - pcin:129290744 1130.93