Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0859 ATGTCTAGACTACAAGAACATGATTACATAGGCTTAGCAGAGACCCGTTCCATGGAAATCTCTGAAAAGAGTTCTGGTCTCAACTTGAACTTGAAGGAGACAGAGCTCAGACTTGGGCTTCCTGGTTGTGAGTCTCCAGAAAGAAAGTCAACAAGTGTGGTATCTCTGTTTGGGAAGGATTTGAGGAACGTTATTTCTGGGTCTAAGAGAGGCTTCTCTGATGCTATAAAAGATGGGTCCTCCAGGAAATGGGTTTTCTCTGCTAGTGATGATGGATCTGACTCCATTCTTGGTTCAGAAGGTAAAAGAAATAATGCCCACAAGCCTTCTTCTCAATCTGCCAAACCAAGCCATTATAAGAAGCCTGAGGTTTCTGCAACAAACGAGCACGCTAGTCCTCCTTCTGCAAAGGCACAGGTTGTGGGGTGGCCGCCAGTTCGATCCTTTCGGAGAAACACAATGGCTTCTAGCTTGACAAAGAACATTGAAGATGAAGAAGAGGGAAAACCAGAACCATGTGGTTGTCTTTATGTAAAAGTTAGTATGGATGGTGTTCCATATCTCAGAAAGGTTGATCTCAGAATGTACACCAACTATATGCAACTTTCTTCATCTCTTGAGCAAATGTTCAACTGTTTCACCATTGGTGAATGCAATTCTGGTGGATTTGCTGGGAAAGATGGTCTGAATGAGAGCAGATTGAAGGATCTTCTTCATGTGTGTGATTATGTTGTTACGTATGAAGACAGAGATGGAGATTGGATGCTTGTTGGCGATGTCCCATGGGAGATGTTCCCTGAATCATGTAGGAGACTGAGGATCATGAAAGGTTCTGAAGCAATTGGGCTAGCTCCCAGGGCCATGGAAAAATGCAGGAGCCACAAAAACTGCAGAAGAACCAATTAG 906 0.4371 MSRLQEHDYIGLAETRSMEISEKSSGLNLNLKETELRLGLPGCESPERKSTSVVSLFGKDLRNVISGSKRGFSDAIKDGSSRKWVFSASDDGSDSILGSEGKRNNAHKPSSQSAKPSHYKKPEVSATNEHASPPSAKAQVVGWPPVRSFRRNTMASSLTKNIEDEEEGKPEPCGCLYVKVSMDGVPYLRKVDLRMYTNYMQLSSSLEQMFNCFTIGECNSGGFAGKDGLNESRLKDLLHVCDYVVTYEDRDGDWMLVGDVPWEMFPESCRRLRIMKGSEAIGLAPRAMEKCRSHKNCRRTN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0859 301 ProSiteProfiles PB1 domain profile. 175 277 IPR000270 GO:0005515
Prci13g0859 301 Gene3D - 172 289 - -
Prci13g0859 301 FunFam Auxin-responsive protein 171 287 - -
Prci13g0859 301 MobiDBLite consensus disorder prediction 95 140 - -
Prci13g0859 301 MobiDBLite consensus disorder prediction 95 118 - -
Prci13g0859 301 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 282 IPR003311 GO:0005634|GO:0006355
Prci13g0859 301 Pfam AUX/IAA family 33 286 IPR033389 -
Prci13g0859 301 SUPERFAMILY CAD & PB1 domains 175 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0859 Prci-Chr13 7267055 7269211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0859 178 297 B3 DNA Binding Superfamily AT5G62000 29.167 1.09e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci13g0859 AUX_IAA 2.7e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0859 K14484 - gmx:100804423 362.459