Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0858 ATGTCTAGACTACAAGAACATGATTACATAGGCTTAGCAGAGACCCGTTCCATGGAAATCTCTGAAAAGAGTTCTGGTCTCAACTTGAACTTGAAGGAGACAGAGCTCAGACTTGGGCTTCCTGGTTGTGAGTCTCCAGAAAGAAAGTCAACAAGTGTGGTATCTCTGTTTGGGAAGGATTTGAGGAACGTTATTTCTGGGTCTAAGAGAGGCTTCTCTGATGCTATAAAAGATGGGTCCTCCAGGAAATGGGTTTTCTCTGCTAGTGATGATGGATCTGACTCCATTCTTGGTTCAGAAGGTAAAAGAAATAATGCCCACAAGCCTTCTTCTCAATCTGCCAAACCAAGCCATTATAAGAAGCCTGAGGTTTCTGCAACAAACGAGCACGCTAGTCCTCCTTCTGCAAAGGCACAGGTTGTGGGGTGGCCGCCAGTTCGATCCTTTCGGAGAAACACAATGGCTTCTAGCTTGACAAAGAACATTGAAGATGAAGAAGAGGGAAAACCAGAACCATGTGGTTGTCTTTATGTAAAAGTTAGTATGGATGGTGTTCCATATCTCAGAAAGGTTGATCTCAGAATGTACACCAACTATATGCAACTTTCTTCATCTCTTGAGCAAATGTTCAACTGTTTCACCATTGGTGAATGCAATTCTGGTGGATTTGCTGGGAAAGATGGTCTGAATGAGAGCAGATTGAAGGATCTTCTTCATGTGTGTGATTATGTTGTTACGTATGAAGACAGAGATGGAGATTGGATGCTTGTTGGCGATGTCCCATGGGAGAGACTGAGGATCATGAAAGGTTCTGAAGCAATTGGGCTAGCTCCCAGGGCCATGGAAAAATGCAGGAGCCACAAAAACTGCAGAAGAACCAATTAG 885 0.4373 MSRLQEHDYIGLAETRSMEISEKSSGLNLNLKETELRLGLPGCESPERKSTSVVSLFGKDLRNVISGSKRGFSDAIKDGSSRKWVFSASDDGSDSILGSEGKRNNAHKPSSQSAKPSHYKKPEVSATNEHASPPSAKAQVVGWPPVRSFRRNTMASSLTKNIEDEEEGKPEPCGCLYVKVSMDGVPYLRKVDLRMYTNYMQLSSSLEQMFNCFTIGECNSGGFAGKDGLNESRLKDLLHVCDYVVTYEDRDGDWMLVGDVPWERLRIMKGSEAIGLAPRAMEKCRSHKNCRRTN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0858 294 Gene3D - 172 282 - -
Prci13g0858 294 Pfam AUX/IAA family 33 279 IPR033389 -
Prci13g0858 294 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 275 IPR003311 GO:0005634|GO:0006355
Prci13g0858 294 ProSiteProfiles PB1 domain profile. 175 281 IPR000270 GO:0005515
Prci13g0858 294 SUPERFAMILY CAD & PB1 domains 175 264 - -
Prci13g0858 294 MobiDBLite consensus disorder prediction 95 140 - -
Prci13g0858 294 FunFam Auxin-responsive protein 171 280 - -
Prci13g0858 294 MobiDBLite consensus disorder prediction 95 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0858 Prci-Chr13 7267055 7269218 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0858 178 268 B3 DNA Binding Superfamily AT5G62000 30.769 7.50e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Prci13g0858 AUX_IAA 2.4e-77 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0858 K14484 - gmx:100804423 343.969