Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0826 ATGAATGGTAGTAGGTCAAGAAATGAGGAGATGTCTCCTCAGCTGCTGGATTTGATCCCAACGGACCGAGAGCGGCATGAAAACAGGGATGAGGAAAGAAGCCACCACAAGTCGTCAGAAGAGAGGAAACTTGAGCTTAGACTTGGTCCGCCTGGTGAAGAAGACTATGTCGCCAGAGGAAGAGGCGAGTCTCTGCTCTCTCTTGGTTACTCCTCAGCCTCCATTAATGGAGGCCAAACCCAGCAGAAGACTGCGTCTTCTCCTTGGGGTTCCACAGGCTACCATGAGAAGAAGACTCAGAACAATAATCAACACAAAGGGGTTTCATCATTCCTACAACCTCAACCCTCTTCTGCAAACACAGCTGTACCCAACAGCTCTCAGAAAAGCAGAACTGCTCCTGGTCCAGTGGTGGGGTGGCCTCCAATTCGTTCATTTAGGAGGAACCTTGCAAGTAGTAGCTCTTCTAAGGTGCCTCCTCCTCATCAACATGAGTCTCAGAATCAGCATGTGGTTGAAGATAAGGTTGCTGGGAAAAAACCTGTGGCTGACAACAACGTTGTTGGTGGTAAAGGCCTGTTTGTGAAGATCAATATGGATGGAGTCCCCATAGGCAGAAAAGTGGACCTCAATGCTTACGATAGCTATGAAAAACTCTCCTTTGCTGTTGACGAACTCTTTAGAGGCCTCCTTGCTGCTCAAAGAGATTCCTGTGGTGGTGTGATTCAGAACAAGCAAGAGGAAGGGAAAGCCATCACAGGTTTATTGGATGGAAGTGGAGAACACACTCTGGTTTATGAGGATAACGAAGGAGACAGGATGCTTGTTGGGGATGTGCCGTGGCACATGTTCGTGTCAACAGTAAAGAGGCTGCGCGTATTGAAGAGTTCTGAGCTCTCTGCTTTTACTCTTGGTAGCAAGCAAGGCAAAAATACCTCTTGA 942 0.4798 MNGSRSRNEEMSPQLLDLIPTDRERHENRDEERSHHKSSEERKLELRLGPPGEEDYVARGRGESLLSLGYSSASINGGQTQQKTASSPWGSTGYHEKKTQNNNQHKGVSSFLQPQPSSANTAVPNSSQKSRTAPGPVVGWPPIRSFRRNLASSSSSKVPPPHQHESQNQHVVEDKVAGKKPVADNNVVGGKGLFVKINMDGVPIGRKVDLNAYDSYEKLSFAVDELFRGLLAAQRDSCGGVIQNKQEEGKAITGLLDGSGEHTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQGKNTS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0826 313 MobiDBLite consensus disorder prediction 19 60 - -
Prci13g0826 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 299 IPR003311 GO:0005634|GO:0006355
Prci13g0826 313 MobiDBLite consensus disorder prediction 1 171 - -
Prci13g0826 313 MobiDBLite consensus disorder prediction 147 166 - -
Prci13g0826 313 Gene3D - 188 307 - -
Prci13g0826 313 MobiDBLite consensus disorder prediction 67 133 - -
Prci13g0826 313 SUPERFAMILY CAD & PB1 domains 190 293 - -
Prci13g0826 313 ProSiteProfiles PB1 domain profile. 192 296 IPR000270 GO:0005515
Prci13g0826 313 FunFam Auxin-responsive protein 188 308 - -
Prci13g0826 313 Pfam AUX/IAA family 44 301 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0826 Prci-Chr13 6947998 6951575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0826 196 307 B3 DNA Binding Superfamily AT4G23980 33.929 2.57e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci13g0826 AUX_IAA 1.4e-68 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0826 K14484 - gmx:100804593 346.28