LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g0812	ATGTTGGCTCTGGGTTTGCTCGCACCTTCACCAGTTAATGCCATCATAGAAATTAAGGACATTTATGGAGTCTCTAGAATCAGTTGGCAAGGCGACCCTTGTGTTCCAACTAACTTAGCTTGGGATGGTCTAAGTTGCAGCTCAGGCAACAATATAAGGATTCTTTCCTTGAACTTGAGCTCAAGCAAACTCACAGGGCAAATTTCTGCATGGTTTGCTGGTTTGGGAAATCTAGAGTCGCTGGATTTGTCAAACAATGAATTGACCGGACAATTACCAGAATTTCTAGCAACTCTTCCTAATTTAAAATTTATTAATGTGTCAGGAAATAAGCTTACAGGTTCGATACCCAAGACTTTAAGGGAAAAAGATAATTTGCAACTAAGTGTAGCTGACAATCCAGGCCTTTGTCAGAAAGATTCATGCAAAAAACACAAGTTTGTAATTCCTCTTATTGCATCAATTGCAGTTTTGGTCCTAATTGCCATTCTTTCTCTAATGATCTGGAGAATCAAAAAGAAAAGGCTAGGTTTTTTTGCCAAATCCCAGAAGATGGAAATTGTAAAACAAAAGAATCGAGAATTTTCTTACTTTGAAGTTCTTCGGATCACCAACAATTTTACAACTCTTATTGGGGAAGGAGGATTTGGGAAAGTTTACTTGAGCACTTTAGAAGATGATACTCAGGTTGCAGTAAAATTACTTTCTCCATCATCAAAGCAAGGATACAAGGAATTTCAGTCGGAGGCTCAACTCTTGACACTTATTTATCATAGAAACTTGGTTTCACTTGTTGGATATTGTCATGAAAATGACAAAAAGGCACTGGTTTATGAATACATGGATAATGGAGACCTTGACCAACTATTATCAGAGAGAAACCCAAATGTTTTAAAGTGGAATGAGAGGCTTCAAGTGGCAGTGGATGCAGCAAAAGGATTGGAATATCTTCATAATGGTTGCAAGACTCCTATAATTCATAGAGACTTGAAGCCATCCAATATTTTATTAAATAAATCTAAGCTAGCCAAGATTGCTGATTTTGGAATGTCTAGAGTATTTTCAAATGATAGAGATTCTCATCTATCAACTCAACCAGCTGGCACACCTGGCTATATTGATCCTGACATGGAAAATTGTTGA	1143	0.3727	MLALGLLAPSPVNAIIEIKDIYGVSRISWQGDPCVPTNLAWDGLSCSSGNNIRILSLNLSSSKLTGQISAWFAGLGNLESLDLSNNELTGQLPEFLATLPNLKFINVSGNKLTGSIPKTLREKDNLQLSVADNPGLCQKDSCKKHKFVIPLIASIAVLVLIAILSLMIWRIKKKRLGFFAKSQKMEIVKQKNREFSYFEVLRITNNFTTLIGEGGFGKVYLSTLEDDTQVAVKLLSPSSKQGYKEFQSEAQLLTLIYHRNLVSLVGYCHENDKKALVYEYMDNGDLDQLLSERNPNVLKWNERLQVAVDAAKGLEYLHNGCKTPIIHRDLKPSNILLNKSKLAKIADFGMSRVFSNDRDSHLSTQPAGTPGYIDPDMENC	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g0812	380	ProSitePatterns	Protein kinases ATP-binding region signature.	211	233	IPR017441	GO:0005524
	Prci13g0812	380	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	325	337	IPR008271	GO:0004672\|GO:0006468
	Prci13g0812	380	PANTHER	OS07G0107800 PROTEIN-RELATED	11	377	-	-
	Prci13g0812	380	Pfam	Protein tyrosine and serine/threonine kinase	208	361	IPR001245	GO:0004672\|GO:0006468
	Prci13g0812	380	ProSiteProfiles	Protein kinase domain profile.	205	380	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0812	380	ProSiteProfiles	Leucine-rich repeat profile.	77	100	IPR001611	GO:0005515
	Prci13g0812	380	FunFam	Leucine-rich repeat receptor-like kinase	10	139	-	-
	Prci13g0812	380	Gene3D	Ribonuclease Inhibitor	17	138	IPR032675	-
	Prci13g0812	380	SUPERFAMILY	L domain-like	37	127	-	-
	Prci13g0812	380	Pfam	Leucine rich repeat	56	112	IPR001611	GO:0005515
	Prci13g0812	380	FunFam	Os07g0541700 protein	281	369	-	-
	Prci13g0812	380	Gene3D	Transferase(Phosphotransferase) domain 1	281	379	-	-
	Prci13g0812	380	Gene3D	Phosphorylase Kinase; domain 1	179	280	-	-
	Prci13g0812	380	FunFam	Leucine-rich repeat receptor-like protein kinase	183	280	-	-
	Prci13g0812	380	MobiDBLite	consensus disorder prediction	358	380	-	-
	Prci13g0812	380	SUPERFAMILY	Protein kinase-like (PK-like)	186	377	IPR011009	-
	Prci13g0812	380	PRINTS	Leucine-rich repeat signature	78	91	-	-
	Prci13g0812	380	PRINTS	Leucine-rich repeat signature	99	112	-	-
	Prci13g0812	380	SMART	serkin_6	205	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g0812	Prci-Chr13	6801092	6808571	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g0812	10	376	Receptor kinase-like Gene Family	AT2G28970	49.871	1.40e-118	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Prci13g0812		PK_Tyr_Ser-Thr	3.9e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g0812	-		-	pcin:129289942	513.072