LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g0796	ATGACCGAACGTTTCGATTTCGTCAGGTCTTGGTTCCAGGGTGACAAAGACACCAAAAACTCACGGCCAATCAGCACATCAATAGCGATTGACGATGATTCCAAAGAGTACAAACTACCAAAGGAAGTGTTGAGCACCGCAATCACGCCACTGAATAGTTCGTTTCCATTAGTTGTCAACGTGAATGCTAGCACAAATCATGAGTATTATGTTTATCTTCATTTCTTTGAATTTGAGAAGCATTCTCAGAATCAGCAGAGAAGTATGGACATTGCCTTCACTGATTCAATCCGAGACAACAACGTCACTCTTGAATACTTGCAACTCCAAACCATCGTTCATCGGATTCCAAAAGAACTCTCTCTTACTAATATTTCCATCACTTCCTCCCCAGGTTCTACTCTGCCCCCCATCGTCAACGGTCTTGAGATCTACAGGGTACGACACAAACAAAATTCACCAACACGTGAAGGAGATGTTGATGCGATGAGGAATATCAGACACGGTTATAACATCATGAGAATCAGTTGGCAAGGAGATCCCTGCATGCCAGAGGATTATAGATGGGAAGGTGTAACTTGCAATAATTACTCTGGTAGCATTCCAAGGATCATTTCATTGAACTTGAGCTCAAGCAGAGTAGATGGAGAGATTATGGGTACTATTTTCTCCAAACTCGACATGTTGGAGTCATTGGACTTGTCAAACAACCAACTGACTGGAGAAATACCAGAATCTTTAGCAAAAGTAGCCAATTTGAAAGTGCTTAATTTGACAGGAAATGATCTCATAGGTTTAGTTCCTGAGTCTCTGGAGGAGAAATCCGGCTTGACATTGAGTTTGGATGGAAATCCAGGTCTCTGTCAAACAGCTAGCTCTTGCAAAACCAAAACGCTCATTGGACCACTTGTTGCCTCAGCAATAGCTTCTGCGGCAGTTCTTCTGATAGCAATTTTTATTCCTATCATGCTCTGCAAACGGAAAGGAAAACCACAAAATGCGATGTTGCCTAAGAAGGGTGGTGATTTTAGATCAAAATGTCAAGCATTTAGTCTGGAAGAAGTTGTTAGTATGACCAATAACTTTGAATCAGTAATTGGTGAAGGCGGATTTGGAAAAGTGTACCTTGGAAAATTACAACATGGTATCCAAGTTGCAGTCAAATTACTGTCCAAGTCATCACACCAACGATTTACCGAGTTTGAATCAGAGGCAAAGCTATTATCATTGGTTTATCATAAAAACTTAGTTTCTCTTATCGGTTACTGTGACGATGGTGACATGAAAGCATTGATTTATGAATATATGGCAAAGGGAAATCTCCTACACCTATTGACAGGTAAGAGCCCTTATGTTATAAAGTGGAAAGAGAGACTTCAAATTGCATTCGATGCAGCATGTGGATTGAACTATCTACATAATGGTTGCAACCCACCAATAGTTCATCGAGACCTAAAATCATCTAACATCTTATTGAGTGAAAACATGCATGCCAAGATTGCTGATTTTGGACTCTGTAAGGTTTTTGCTAGTGATACTGATACCCATATTTCAACTCGTCCTGCTGGCACATTTGGCTATCTTGACCCTGAATTTTACAGATGTGGGAACTTGCACAAGAATAGTGATGTTTATAGTTTTGGGATAATTCTACTTGAGTTGATGACCGGACGACCAGCTATCATCAAAACATCTGAAGGTATAAATCACATAGTTGATTGGGTGACTCCAAAGTTTAAAGTGGGAGATATGGAATCCATTATGGATCCGAAATTAGAGGGAAAATTCAATATTGCTTCAGCAAGAAAGGTTATAGAGATAGCCATGTGTTGCATTGAAACAAGTGCAGTGAAAAGACCTGATATCAGTAATGTAGAGAATGATCTGAAGCAGTGTCTGGCTCTGGAAACGAACAATGAAAGTGAAGAAAGCAGCAGTTTATTCTCAAGCAGCACATTTGATACAAGTTTTTATCAGTGTGGATCACACTCACCACCATCTGTTAGGTAA	2010	0.4	MTERFDFVRSWFQGDKDTKNSRPISTSIAIDDDSKEYKLPKEVLSTAITPLNSSFPLVVNVNASTNHEYYVYLHFFEFEKHSQNQQRSMDIAFTDSIRDNNVTLEYLQLQTIVHRIPKELSLTNISITSSPGSTLPPIVNGLEIYRVRHKQNSPTREGDVDAMRNIRHGYNIMRISWQGDPCMPEDYRWEGVTCNNYSGSIPRIISLNLSSSRVDGEIMGTIFSKLDMLESLDLSNNQLTGEIPESLAKVANLKVLNLTGNDLIGLVPESLEEKSGLTLSLDGNPGLCQTASSCKTKTLIGPLVASAIASAAVLLIAIFIPIMLCKRKGKPQNAMLPKKGGDFRSKCQAFSLEEVVSMTNNFESVIGEGGFGKVYLGKLQHGIQVAVKLLSKSSHQRFTEFESEAKLLSLVYHKNLVSLIGYCDDGDMKALIYEYMAKGNLLHLLTGKSPYVIKWKERLQIAFDAACGLNYLHNGCNPPIVHRDLKSSNILLSENMHAKIADFGLCKVFASDTDTHISTRPAGTFGYLDPEFYRCGNLHKNSDVYSFGIILLELMTGRPAIIKTSEGINHIVDWVTPKFKVGDMESIMDPKLEGKFNIASARKVIEIAMCCIETSAVKRPDISNVENDLKQCLALETNNESEESSSLFSSSTFDTSFYQCGSHSPPSVR	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g0796	669	FunFam	Leucine-rich repeat receptor-like kinase	158	290	-	-
	Prci13g0796	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	480	492	IPR008271	GO:0004672\|GO:0006468
	Prci13g0796	669	SMART	serkin_6	360	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0796	669	Pfam	Protein tyrosine and serine/threonine kinase	362	629	IPR001245	GO:0004672\|GO:0006468
	Prci13g0796	669	Pfam	Leucine rich repeat	206	263	IPR001611	GO:0005515
	Prci13g0796	669	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	436	644	-	-
	Prci13g0796	669	FunFam	receptor-like protein kinase FERONIA	327	435	-	-
	Prci13g0796	669	Gene3D	Transferase(Phosphotransferase) domain 1	436	655	-	-
	Prci13g0796	669	Gene3D	Phosphorylase Kinase; domain 1	338	435	-	-
	Prci13g0796	669	PANTHER	OS07G0107800 PROTEIN-RELATED	9	639	-	-
	Prci13g0796	669	Pfam	Malectin-like domain	8	147	IPR024788	-
	Prci13g0796	669	PRINTS	Leucine-rich repeat signature	250	263	-	-
	Prci13g0796	669	PRINTS	Leucine-rich repeat signature	229	242	-	-
	Prci13g0796	669	ProSitePatterns	Protein kinases ATP-binding region signature.	366	388	IPR017441	GO:0005524
	Prci13g0796	669	SUPERFAMILY	Protein kinase-like (PK-like)	346	629	IPR011009	-
	Prci13g0796	669	SUPERFAMILY	L domain-like	185	278	-	-
	Prci13g0796	669	ProSiteProfiles	Protein kinase domain profile.	360	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0796	669	CDD	STKc_IRAK	366	631	-	-
	Prci13g0796	669	Gene3D	Ribonuclease Inhibitor	161	297	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g0796	Prci-Chr13	6674432	6679621	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g0796	24	657	Receptor kinase-like Gene Family	AT2G28970	43.531	9.89e-174	512

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Prci13g0796		PK_Tyr_Ser-Thr	8.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g0796	-		-	pcin:129290778	1304.27