LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g0795	ATGACCGAACGTTTCGATTTCGTCAGGTCTTGGTTCCAGGGTGACAAAGACACCAAAAACTCACGGCCAATCAGCACATCAATAGCGATTGACGATGATTCCAAAGAGTACAAACTACCAAAGGAAGTGTTGAGCACCGCAATCACGCCACTGAATAGTTCGTTTCCATTAGTTGTCAACGTGAATGCTAGCACAAATCATGAGTATTATGTTTATCTTCATTTCTTTGAATTTGAGAAGCATTCTCAGAATCAGCAGAGAAGTATGGACATTGCCTTCACTGATTCAATCCGAGACAACAACGTCACTCTTGAATACTTGCAACTCCAAACCATCGTTCATCGGATTCCAAAAGAACTCTCTCTTACTAATATTTCCATCACTTCCTCCCCAGGTTCTACTCTGCCCCCCATCGTCAACGGTCTTGAGATCTACAGGGTACGACACAAACAAAATTCACCAACACGTGAAGGAGATGGCAAGTTTGATGCGATGAGGAATATCAGACACGGTTATAACATCATGAGAATCAGTTGGCAAGGAGATCCCTGCATGCCAGAGGATTATAGATGGGAAGGTGTAACTTGCAATAATTACTCTGGTAGCATTCCAAGGATCATTTCATTGAACTTGAGCTCAAGCAGAGTAGATGGAGAGATTATGGGTACTATTTTCTCCAAACTCGACATGTTGGAGTCATTGGACTTGTCAAACAACCAACTGACTGGAGAAATACCAGAATCTTTAGCAAAAGTAGCCAATTTGAAAGTGCTTAATTTGACAGGAAATGATCTCATAGGTTTAGTTCCTGAGTCTCTGGAGGAGAAATCCGGCTTGACATTGAGTTTGGATGGAAATCCAGGTCTCTGTCAAACAGCTAGCTCTTGCAAAACCAAAACGCTCATTGGACCACTTGTTGCCTCAGCAATAGCTTCTGCGGCAGTTCTTCTGATAGCAATTTTTATTCCTATCATGCTCTGCAAACGGAAAGGAAAACCACAAAATGCGATGTTGCCTAAGAAGGGTGGTGATTTTAGATCAAAATGTCAAGCATTTAGTCTGGAAGAAGTTGTTAGTATGACCAATAACTTTGAATCAGTAATTGGTGAAGGCGGATTTGGAAAAGTGTACCTTGGAAAATTACAACATGGTATCCAAGTTGCAGTCAAATTACTGTCCAAGTCATCACACCAACGATTTACCGAGTTTGAATCAGAGGCAAAGCTATTATCATTGGTTTATCATAAAAACTTAGTTTCTCTTATCGGTTACTGTGACGATGGTGACATGAAAGCATTGATTTATGAATATATGGCAAAGGGAAATCTCCTACACCTATTGACAGGTAAGAGCCCTTATGTTATAAAGTGGAAAGAGAGACTTCAAATTGCATTCGATGCAGCATGTGGATTGAACTATCTACATAATGGTTGCAACCCACCAATAGTTCATCGAGACCTAAAATCATCTAACATCTTATTGAGTGAAAACATGCATGCCAAGATTGCTGATTTTGGACTCTGTAAGGTTTTTGCTAGTGATACTGATACCCATATTTCAACTCGTCCTGCTGGCACATTTGGCTATCTTGACCCTGAATTTTACAGATGTGGGAACTTGCACAAGAATAGTGATGTTTATAGTTTTGGGATAATTCTACTTGAGTTGATGACCGGACGACCAGCTATCATCAAAACATCTGAAGGTATAAATCACATAGTTGATTGGGTGACTCCAAAGTTTAAAGTGGGAGATATGGAATCCATTATGGATCCGAAATTAGAGGGAAAATTCAATATTGCTTCAGCAAGAAAGGTTATAGAGATAGCCATGTGTTGCATTGAAACAAGTGCAGTGAAAAGACCTGATATCAGTAATGTAGAGAATGATCTGAAGCAGTGTCTGGCTCTGGAAACGAACAATGAAAGTGAAGAAAGCAGCAGTTTATTCTCAAGCAGCACATTTGATACAAGTTTTTATCAGTGTGGATCACACTCACCACCATCTGTTAGGTAA	2016	0.4003	MTERFDFVRSWFQGDKDTKNSRPISTSIAIDDDSKEYKLPKEVLSTAITPLNSSFPLVVNVNASTNHEYYVYLHFFEFEKHSQNQQRSMDIAFTDSIRDNNVTLEYLQLQTIVHRIPKELSLTNISITSSPGSTLPPIVNGLEIYRVRHKQNSPTREGDGKFDAMRNIRHGYNIMRISWQGDPCMPEDYRWEGVTCNNYSGSIPRIISLNLSSSRVDGEIMGTIFSKLDMLESLDLSNNQLTGEIPESLAKVANLKVLNLTGNDLIGLVPESLEEKSGLTLSLDGNPGLCQTASSCKTKTLIGPLVASAIASAAVLLIAIFIPIMLCKRKGKPQNAMLPKKGGDFRSKCQAFSLEEVVSMTNNFESVIGEGGFGKVYLGKLQHGIQVAVKLLSKSSHQRFTEFESEAKLLSLVYHKNLVSLIGYCDDGDMKALIYEYMAKGNLLHLLTGKSPYVIKWKERLQIAFDAACGLNYLHNGCNPPIVHRDLKSSNILLSENMHAKIADFGLCKVFASDTDTHISTRPAGTFGYLDPEFYRCGNLHKNSDVYSFGIILLELMTGRPAIIKTSEGINHIVDWVTPKFKVGDMESIMDPKLEGKFNIASARKVIEIAMCCIETSAVKRPDISNVENDLKQCLALETNNESEESSSLFSSSTFDTSFYQCGSHSPPSVR	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g0795	671	CDD	STKc_IRAK	368	633	-	-
	Prci13g0795	671	ProSitePatterns	Protein kinases ATP-binding region signature.	368	390	IPR017441	GO:0005524
	Prci13g0795	671	Pfam	Protein tyrosine and serine/threonine kinase	364	631	IPR001245	GO:0004672\|GO:0006468
	Prci13g0795	671	PANTHER	OS07G0107800 PROTEIN-RELATED	9	641	-	-
	Prci13g0795	671	SUPERFAMILY	Protein kinase-like (PK-like)	348	631	IPR011009	-
	Prci13g0795	671	SMART	serkin_6	362	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0795	671	ProSiteProfiles	Protein kinase domain profile.	362	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0795	671	SUPERFAMILY	L domain-like	187	280	-	-
	Prci13g0795	671	FunFam	Leucine-rich repeat receptor-like kinase	161	292	-	-
	Prci13g0795	671	Pfam	Malectin-like domain	8	147	IPR024788	-
	Prci13g0795	671	Gene3D	Transferase(Phosphotransferase) domain 1	438	657	-	-
	Prci13g0795	671	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	482	494	IPR008271	GO:0004672\|GO:0006468
	Prci13g0795	671	PRINTS	Leucine-rich repeat signature	231	244	-	-
	Prci13g0795	671	PRINTS	Leucine-rich repeat signature	252	265	-	-
	Prci13g0795	671	Gene3D	Phosphorylase Kinase; domain 1	340	437	-	-
	Prci13g0795	671	Pfam	Leucine rich repeat	208	265	IPR001611	GO:0005515
	Prci13g0795	671	Gene3D	Ribonuclease Inhibitor	164	299	IPR032675	-
	Prci13g0795	671	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	438	646	-	-
	Prci13g0795	671	FunFam	receptor-like protein kinase FERONIA	329	437	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g0795	Prci-Chr13	6674432	6679621	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g0795	24	659	Receptor kinase-like Gene Family	AT2G28970	43.247	5.66e-171	505

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Prci13g0795		PK_Tyr_Ser-Thr	8.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g0795	-		-	pcin:129290778	1316.21