LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g0793	ATGTCAGTGATACTTCTTTATGAAATATTTATCCCAACTCATCATCATTCTCTACTTCTCGAAAGCAGAACCAATAATTTAAGCTACCCAGTTCATTTCTCTCGTTTTCGTCTTTCCTATAAACTTGAAAACATGAAGGGTACACTGCTCTCGATTCTTGCTTTGTATGTGTTCTTAGTTTCATTCATCAATATTATTAGTCACCCAGTACAAGTTGTTGCAGATGGCGCTAATTCATCAGGGGTGATACGCATAGATTGTGGGGTAACCAAAGAGTATTGGGACGACAATAATTTTTACTATGAGGCAGATGGAGCAAGGTTTGTGGAATTTGGGGAAATACATAACGTATCCTCAAAGTACATCTTGACAAGTAAAGACGACAACCGGTCTGCGCAGCAACTGAACACCTTGAGAAGCTTCCCAGAAGGAGAAAGGAACTGCTATAAGCTCAAACCCAAACAAGGCAAAAATAACACTTATCTCATAAGGGCTTTGCACTTTTACGGAAACTATGACAACAAATATTCAACTCCAGAGTTTGATTTGCATCTTGGCGTCGATTATTGGAGCCATATAGGTTTGGATGATTCCAGATATTCTTTCCAAGGGGAGATCATTCATGTTGCCCCAGCCGACACTGTTGACGTGTGCCTTGCAAACGCAGGGCGGGGCATCCCACTCATTTCCTTGTTAGAGCTTTATCCTTTGCCTTATTCTCTATATCAGCCCCCAACACCACTAGACCTCTACGATCGCATTAGCTGTGGTATGAAAGGAACTTTCTCCAGATACTCGAATGACCCCTACGGCAGATCTTGGTTCAGTGATACTGATAAAGCCATCGCCAACTCAAAGTCAATCAGCACATCAACAGCTATTAAGGATGATTCCAAAGACTACAAACCTCCAAAGCAAGTGTTGAGCACTGCAATCACATCACTGAATGCTTCCTTTCCCTTAGTGATTAACGTGTTTCCCCGTAATGACTATGAGTATCATGTTTATCTTCATTTTTTTGACTTTGAGAAGCATCCTCAAAATCAGCGAAGAAGCATGGAAATAAATTTGACCGATAGGATCCGAGAGTCCATAACTCTTAACTACAAGCAACTCCTTACCATAAACAAGACAATTCCGAAAGGGTCCTTCAAAGCAATTTCAATCATATCCTCCCCAGGTTCTGGTTTGCCCCCCATGATCAATGCTTATGAGATCTACAGAGTACTACCACAGCCAACGTCACCAACTCATGAACGAGATGTTGATGCTATATGGAAGATCAAAGAGGCCTATAAAATCCTCAGAATCAGTTGGCAAGGAGATCCCTGCTTGCGAGTGCAATATAGATGGGAAGGTGTAACTTGCAATTACTCTGAAAGCATCCCTAGGATCATCTCATTGGACTTGAGCTCAAGCAAATTAGAAGGAGACATAGTTACTTATTTCTCCAATCTCATGATGCTGGCTTCCTTAGATTTGTCAAACAACCAATTGACAGGAGAAATACCACAACTTTTGGCAAAACTTCCCAAATTGAAAGTACTTAATTTGACAGGGAATAATCTCAAAGGTTCAATTCCAAAGGCTCTGATGGAGAAGTCGAGTACCGGTTTGACGTTGAGTTTGGATGGAAACCCAGGCCTATGCCAAACAGGTTCCTGCAAAACCACAACAAAGAAGTTCATTGTACCACTTGTTGCCTCAGTTGCAGCTTCTATGGCAACTCTTGTAATAATAATCTACATTTCGACGGTACTGTACAAACGTAAAAGAAAAAAGCAAAAAGTGTTGTTGTTCAAGAAAGCTGGCGATCTTAAATCAAAAAATCAAGCATTTTGTGAGGATGAAATTCTTAGGATTACCAATAACTTCGAATCAGTAATTGGAGAAGGGGGATTTGGAAAAGTGTACCTTGGAAAGCTACAAGATGGTACACAAGTTGCAGTCAAATTGCTTTCAAAGTCATCACAACAAGGATTTAAAGAGTTTGAATCAGAGGCAAAACTATTGTCCATAGTTTTTCATAGGAACCTGGTTTCTCTTGTTGGTTACTGTGACGATGGTGACATGAGAGCATTGATTTATGAATATATGGCAAAGGGAAATCTTCGACACCAATTGTCAGATAAAAATCCATGCATTTTAAAGTGGAATGAGAGACTTCAAATCGCATTAGATACAGCATATGGACTGGACTATTTGCATAATGGCTGCAAACCACCGATAATTCATAGAGATCTAAAATCATCTAACATCTTAATAAGTGAAAACATGCAAGCCAAAATAGCTGATTTTGGATTATCCAAAGCTTTTGCTAATGACACTGACACTCACATTTCAACTCGTCCAGCAGGCACATTTGGTTACCTTGACCCCGAATTCTATAGGTTTGGGAACTTGAACAAGAAAAGTGATGTTTATAGTTTTGGGATAATTCTACTTGAGCTAATGACCGGTCGATCAGCAATTAACAAAACACCTGAAGGCACAAGTCACATAGTTGATTGGGTAACTCCAAAGTTTGAGATCGAGGATATCCAATCTGTTATGGATCCAAAGTTAGAGGGAAATTTCAATACTGCTTCAGCTCAGAAGCTTTTAGAGATAGCCTTGTCCTGTGTTCAATCAACTGCAATCAAAAGACCTGATATAAGTAATGTGGTGAATGATCTGAAGCAATGCTTGGCCTTGGAAACATCCCTTGAAAGTGCAGAAAGCAGCACAATATTATCAGGCACTACATTGTTTGATACAAGTTTTTATCAGTGTGGATCAGACTCACCTAGCTCCATCTGTTAG	2802	0.3986	MSVILLYEIFIPTHHHSLLLESRTNNLSYPVHFSRFRLSYKLENMKGTLLSILALYVFLVSFINIISHPVQVVADGANSSGVIRIDCGVTKEYWDDNNFYYEADGARFVEFGEIHNVSSKYILTSKDDNRSAQQLNTLRSFPEGERNCYKLKPKQGKNNTYLIRALHFYGNYDNKYSTPEFDLHLGVDYWSHIGLDDSRYSFQGEIIHVAPADTVDVCLANAGRGIPLISLLELYPLPYSLYQPPTPLDLYDRISCGMKGTFSRYSNDPYGRSWFSDTDKAIANSKSISTSTAIKDDSKDYKPPKQVLSTAITSLNASFPLVINVFPRNDYEYHVYLHFFDFEKHPQNQRRSMEINLTDRIRESITLNYKQLLTINKTIPKGSFKAISIISSPGSGLPPMINAYEIYRVLPQPTSPTHERDVDAIWKIKEAYKILRISWQGDPCLRVQYRWEGVTCNYSESIPRIISLDLSSSKLEGDIVTYFSNLMMLASLDLSNNQLTGEIPQLLAKLPKLKVLNLTGNNLKGSIPKALMEKSSTGLTLSLDGNPGLCQTGSCKTTTKKFIVPLVASVAASMATLVIIIYISTVLYKRKRKKQKVLLFKKAGDLKSKNQAFCEDEILRITNNFESVIGEGGFGKVYLGKLQDGTQVAVKLLSKSSQQGFKEFESEAKLLSIVFHRNLVSLVGYCDDGDMRALIYEYMAKGNLRHQLSDKNPCILKWNERLQIALDTAYGLDYLHNGCKPPIIHRDLKSSNILISENMQAKIADFGLSKAFANDTDTHISTRPAGTFGYLDPEFYRFGNLNKKSDVYSFGIILLELMTGRSAINKTPEGTSHIVDWVTPKFEIEDIQSVMDPKLEGNFNTASAQKLLEIALSCVQSTAIKRPDISNVVNDLKQCLALETSLESAESSTILSGTTLFDTSFYQCGSDSPSSIC	933

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g0793	933	Gene3D	Phosphorylase Kinase; domain 1	605	698	-	-
	Prci13g0793	933	PRINTS	Leucine-rich repeat signature	489	502	-	-
	Prci13g0793	933	PRINTS	Leucine-rich repeat signature	510	523	-	-
	Prci13g0793	933	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	699	905	-	-
	Prci13g0793	933	ProSiteProfiles	Protein kinase domain profile.	623	896	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0793	933	ProSitePatterns	Protein kinases ATP-binding region signature.	629	651	IPR017441	GO:0005524
	Prci13g0793	933	Pfam	Leucine rich repeat	467	523	IPR001611	GO:0005515
	Prci13g0793	933	Gene3D	Ribonuclease Inhibitor	424	545	IPR032675	-
	Prci13g0793	933	SUPERFAMILY	Protein kinase-like (PK-like)	611	892	IPR011009	-
	Prci13g0793	933	FunFam	Leucine-rich repeat receptor-like kinase	420	552	-	-
	Prci13g0793	933	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	743	755	IPR008271	GO:0004672\|GO:0006468
	Prci13g0793	933	Pfam	Protein tyrosine and serine/threonine kinase	625	892	IPR001245	GO:0004672\|GO:0006468
	Prci13g0793	933	CDD	STKc_IRAK	629	894	-	-
	Prci13g0793	933	Gene3D	Transferase(Phosphotransferase) domain 1	699	912	-	-
	Prci13g0793	933	SUPERFAMILY	L domain-like	418	533	-	-
	Prci13g0793	933	Pfam	Malectin-like domain	85	409	IPR024788	-
	Prci13g0793	933	SMART	serkin_6	623	896	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0793	933	FunFam	Leucine-rich repeat receptor-like protein kinase	601	698	-	-
	Prci13g0793	933	PANTHER	OS07G0107800 PROTEIN-RELATED	83	900	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g0793	Prci-Chr13	6610320	6616460	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g0793	56	897	Receptor kinase-like Gene Family	AT2G19230	42.874	0.0	623

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Prci13g0793		Malectin_like	5.6e-75	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g0793	-		-	pcin:129289802	1820.05