Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0789 ATGGAAATCGTTCATGTTTCTCCAACTGACAACATTGATGTCTGTCTCATCAACGCTGGCGACGGAGCTCCTTTCATTTCGTTGTTGGAAGTTTGGCCTCTTGCCAATTCTATATATCGAACCACTTCCAATTCATTGCCCCTAGATCTCATGGCCCGCTTTAATCTGGGAATGTCTGAAGAAGATTCTAGTTTCATCAGGTCTTGGCGCAATAGGCAGATTGAAAACTCCGAGACAATCAGTGCATTAGAAACGATTCACAGTGATGAAACAGACTACAAGCTGCCAAATGAAGTATTGGGCACTGCAATCCAATCACAGAAAGGCTACCCCTACCCTGTCTTATTTATCCACTTGAATTTCGATATAGATTATGAATATCACCTGTACCTTCATTTTTTTGACTTCGTGGGGCATCCCCAAAATCAGCTTAGAAAGATGTACATTGCTTTCGATGCAAACCTGCTGGCCGTAACTCTTAAATATCAGGAGCCCCAGACGATAAAGCAGATAATTCCAAAGGGGCTCGGCCTAAATAAAATTTCAATTGTAGGCTCCCCAGATTCTAGTTTGCCACCCATGATCAATGCTCTGGAGATCTTTAGGGTACTACTCCAACCAAATGCACCAACTCATGAAGGAGATGTCGATGCTATGCGGAGCATCAAGCATGCTTATAACATCACGAGAATCGACTGGCAAGGAGATCCATGCATGCCAAGAGATTATAGATGGGAAGGTCTGAATTGCAACTCTGACAACATTCCAAGGGTGACTTCGTTGGATTTGTCCAACAACCCATTGACAGGAGAAATACCTCAATTTTTAGTAGAACTACCCAATTTGAAGCGAATTAACTTGTCAGGGAACAATCTCACTGGTTCAATTCCCAAGGCTTTAAGGGAGAAAAACGGCACTACTTTGATATTAAGTTTGGATGGAAATCCAGGTCTCTGTCAAATAGGTGTTTGCAGAACCAAAACACAGAAGTCCATTATACCAATTATTGCATCCGTGGCAGCTTCTGTAGCAGTTCTTGTAATACTAGCCTGTATTTCTGTGATGTTCTGCAAGCATAAAATGAAAAAACAAATGAACTTTTCTCCATTCAAGAAGGACGGGGAACTGAAATCGAAAAATCTTGCATTTAATCACTTTGAAGTTCTTAGTATTACCAATCACTTTGAAACCGTAATTGGAGAAGGGGGATTTGGAAAAGTGTATCTTGGCACCCTTCAGGATGATACGCAAGTTGCAATCAAGTTACTGTCGAAGTCATCACAACAAGGGTTTAAGGAATTCCAGTCCGAGGTGGAACTTTTGATGGTTGTTCATCATAGGAACTTGGTTTCTCTTGTTGGCTATTGTAACGATGGTGACATGAAAGCACTAGTTTATGAATACATGCCTGAAGGAAATCTCCGACAGAAATTATCAGATAAGAACCCACGTGTTTTGAAATGGAATGAGAGACTTCAAATAGCATGGGATACAGCATGTGGGTTGGACTATCTACATAATGGTTGTAAGCCAGCAATAATCCACAGAGACCTCAAAACTTCTAACATCTTGCTAAGCAAAAACATGCAAGCCAAGATTGCTGACTTTGGATTGTCCAGAGCTTTTCTCAACGACACTGATACTAAAGTCTCAACTTGTCCTGCTGGCACGCTTGGTTATCTTGATCCTGAATTCCATAGCTCTGGAAACCTAAATAAGAAAAGTGATGTTTATAGTTTTGGGATAATTTTACTTGAGCTCATAACTGGTCGGCCAGCAATAATGGGAACACGCGGCAATACAAATCACATATCTAATTGGGTCCGTCCAAGGCTGGAGAGTGGGGATATCCAATCCATTGTGGATCCAAGATTAGAGGGAAAATTCAATGCTGCTTCAGCATGGAAATTTTTAGAGATAGGCATATCTTGCATTCCACCAATTTCAATTCAAAGGCCTGATATGGGTCATGTAGTGGCTGAGTTGAAGGAATGTCTAGCCTCGGAAATATCCCTTGAAAGTGCAGAGGGTAACAGTGGAATTTCTGGCTCTGCATCAAGGATCCGTTATTTTCCACTTGAATCAAACTCAGCTCCATGTGCCAGGTAG 2109 0.4149 MEIVHVSPTDNIDVCLINAGDGAPFISLLEVWPLANSIYRTTSNSLPLDLMARFNLGMSEEDSSFIRSWRNRQIENSETISALETIHSDETDYKLPNEVLGTAIQSQKGYPYPVLFIHLNFDIDYEYHLYLHFFDFVGHPQNQLRKMYIAFDANLLAVTLKYQEPQTIKQIIPKGLGLNKISIVGSPDSSLPPMINALEIFRVLLQPNAPTHEGDVDAMRSIKHAYNITRIDWQGDPCMPRDYRWEGLNCNSDNIPRVTSLDLSNNPLTGEIPQFLVELPNLKRINLSGNNLTGSIPKALREKNGTTLILSLDGNPGLCQIGVCRTKTQKSIIPIIASVAASVAVLVILACISVMFCKHKMKKQMNFSPFKKDGELKSKNLAFNHFEVLSITNHFETVIGEGGFGKVYLGTLQDDTQVAIKLLSKSSQQGFKEFQSEVELLMVVHHRNLVSLVGYCNDGDMKALVYEYMPEGNLRQKLSDKNPRVLKWNERLQIAWDTACGLDYLHNGCKPAIIHRDLKTSNILLSKNMQAKIADFGLSRAFLNDTDTKVSTCPAGTLGYLDPEFHSSGNLNKKSDVYSFGIILLELITGRPAIMGTRGNTNHISNWVRPRLESGDIQSIVDPRLEGKFNAASAWKFLEIGISCIPPISIQRPDMGHVVAELKECLASEISLESAEGNSGISGSASRIRYFPLESNSAPCAR 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0789 702 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Prci13g0789 702 Pfam Malectin-like domain 2 203 IPR024788 -
Prci13g0789 702 SUPERFAMILY Protein kinase-like (PK-like) 380 662 IPR011009 -
Prci13g0789 702 PANTHER OS07G0107800 PROTEIN-RELATED 2 666 - -
Prci13g0789 702 CDD STKc_IRAK 399 664 - -
Prci13g0789 702 SUPERFAMILY L domain-like 240 302 - -
Prci13g0789 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Prci13g0789 702 Gene3D Transferase(Phosphotransferase) domain 1 470 679 - -
Prci13g0789 702 ProSiteProfiles Protein kinase domain profile. 393 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g0789 702 Pfam Protein tyrosine and serine/threonine kinase 395 593 IPR001245 GO:0004672|GO:0006468
Prci13g0789 702 Pfam Leucine Rich repeats (2 copies) 256 295 IPR025875 -
Prci13g0789 702 Gene3D Phosphorylase Kinase; domain 1 399 469 - -
Prci13g0789 702 Gene3D Ribonuclease Inhibitor 216 317 IPR032675 -
Prci13g0789 702 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 469 675 - -
Prci13g0789 702 FunFam Leucine-rich repeat receptor-like protein kinase 371 468 - -
Prci13g0789 702 SMART serkin_6 393 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0789 Prci-Chr13 6530580 6536728 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0789 2 679 Receptor kinase-like Gene Family AT2G28970 40.358 4.45e-172 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Prci13g0789 PK_Tyr_Ser-Thr 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0789 - - pcin:129289825 1398.65