Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0787 ATGGATGGTCTTTCCTGGGATACTTCTGAATTTTTCACCAATATGCCGAACTTGTGGAACGCTCAACCAGAAGACATTGAAGAGAAAGTATGCTACGCCACGCCTGAATTCGATTATCAAGTGCATGAGACGCAGAATAATAAACCAGCTCAAACAGATCATCATCTTCACCATCTTTATTCAGCTTTTGATCTTGTGCCAGATTATTTCGACACTCATATGGCCAACCAACACCACCACCAACAACAACAGCTCATCAATGGCGGCGTCTCATACAGTGACATCAACAGAGATGACGGGGATATTTCCACGATTCTATCTGATAACTGTGGAAGAAACATATGGAGCTTCAACAACAATAATAATGGAAGTTCAGTTTCCCCTGGTGATAAATCTCAGAAGAGTAATAACATCGCTTCTGCAGCTTCCTGTGGTAGCGGAAAGAACAAGGACGACGTCCTTCAGTATCAAGTCAATGAAATTGAAGACGCCATTTCTCACAGCACTTCATCACGTCCATGTGTGGTCAATCAAGGCAATAATATTTCAGAACGTAACGAGCTTAATCATGCAAAAAGGAGTTTTGGACTCATTCCAGAGAATAACAATCCACCAAAGCCGAAGAAATCTAGATGGGAACATAACTTCTCACCTTCTTCAAACATAAATTTTCAGCAGCCAAACTCAAGCATGTCATCTAATTCCAGTATTATTACCCAAGAGCCTGATGCAGAGGCCATGGCACACATGAAGGAGATGATATATAGGGCTGCAGCGTTCAGGCCAGTGGACTTAGTGTTGGAGGTGGTGGAAAAGCCTAGAAGGAAGAATGTGAGAATCTCAACAGATCCACAGACTGTAGCAGCGAGGCAAAGAAGAGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACAGCTTCAACGCTTGATGAAGCTGCAAATTATCTCAAGTTTCTCAGGTCGCAGGTCAAAGCATTGGAAAGTCTAGGAGACAAGGTTCATTATTCTATGAACTGTAATCCCTTTCTCTTTTACTAA 1068 0.4242 MDGLSWDTSEFFTNMPNLWNAQPEDIEEKVCYATPEFDYQVHETQNNKPAQTDHHLHHLYSAFDLVPDYFDTHMANQHHHQQQQLINGGVSYSDINRDDGDISTILSDNCGRNIWSFNNNNNGSSVSPGDKSQKSNNIASAASCGSGKNKDDVLQYQVNEIEDAISHSTSSRPCVVNQGNNISERNELNHAKRSFGLIPENNNPPKPKKSRWEHNFSPSSNINFQQPNSSMSSNSSIITQEPDAEAMAHMKEMIYRAAAFRPVDLVLEVVEKPRRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASTLDEAANYLKFLRSQVKALESLGDKVHYSMNCNPFLFY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0787 355 SMART finulus 286 335 IPR011598 GO:0046983
Prci13g0787 355 MobiDBLite consensus disorder prediction 124 149 - -
Prci13g0787 355 MobiDBLite consensus disorder prediction 124 144 - -
Prci13g0787 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Prci13g0787 355 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 99 344 IPR045843 GO:0003700|GO:0006355
Prci13g0787 355 Gene3D - 285 348 IPR036638 GO:0046983
Prci13g0787 355 Pfam Helix-loop-helix DNA-binding domain 290 329 IPR011598 GO:0046983
Prci13g0787 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 344 IPR036638 GO:0046983
Prci13g0787 355 MobiDBLite consensus disorder prediction 195 236 - -
Prci13g0787 355 Coils Coil 319 339 - -
Prci13g0787 355 MobiDBLite consensus disorder prediction 214 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0787 Prci-Chr13 6466022 6468159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0787 192 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 67.763 3.58e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci13g0787 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0787 - - pcin:129290347 668.692