Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0738 ATGCAAGATCCAATGGCATTTCAATCCAAGAAAAGCCATGGATTCCCTGAACAAGAACAGCTCAAGTGCCCACGTTGTGATTCCATGAACACCAAGTTCTGCTACTACAACAATTACAATCTCTCGCAGCCACGCCATTTCTGCAAGAGTTGTAGAAGGTACTGGACCAAAGGAGGCACTCTCCGCAACATACCCGTCGGTGGCGGGAGCCGGAAGAACACAAAACGATCATCTAGTAGCGCTAAACGATTATCCGCAACACCATCCTCACATTCCTCTCCGTCGGTCCCTGGCAGCGCAGACCCGACCCCTGTTTATACCGACTTGACAAGTCAAAATTTCAGTTCGCTTCTGGCATCATCATCAACTGGGCATTTGGGGAGTGTTTTGGAGGGTCTGGATCCAAATGGGTCGGGTTTGAAAATGATGGAATCGGGTGAATTTGGGACGAATGCGAGCACTGTTGGACGGGTTGTGGACCCGGGTTCGGAGATGCAGAGTAATGGTGATTCAGAGAGGTTTCTGGGTTTGCAGAATGGTGAATCGAGCTATTGGAATAGCGGTAACGAGTGGTCTGACCTTGCGATGTATACACCAGGCTCGAGCTTTCAGTAG 615 0.4976 MQDPMAFQSKKSHGFPEQEQLKCPRCDSMNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGTLRNIPVGGGSRKNTKRSSSSAKRLSATPSSHSSPSVPGSADPTPVYTDLTSQNFSSLLASSSTGHLGSVLEGLDPNGSGLKMMESGEFGTNASTVGRVVDPGSEMQSNGDSERFLGLQNGESSYWNSGNEWSDLAMYTPGSSFQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0738 204 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Prci13g0738 204 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 147 IPR045174 GO:0003700|GO:0006355
Prci13g0738 204 MobiDBLite consensus disorder prediction 70 106 - -
Prci13g0738 204 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Prci13g0738 204 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Prci13g0738 204 MobiDBLite consensus disorder prediction 62 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0738 Prci-Chr13 6143337 6145284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0738 15 196 C2C2-Dof Transcription Factor Family AT1G51700 46.196 9.72e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci13g0738 zf-Dof 8.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0738 - - gmx:100798927 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0738 13 6143337 6145284 Prci12g2094 12 38393604 38395287 CCT
Prci13g0738 13 6143337 6145284 Prci13g0738 13 6143337 6145284 ECH