Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0678 ATGATGAAGGGTTTGATGTTTCACCAGCAACAGCAACAAGTAGTGGAAGAAAACATGTCTAATTTGACTTCTGCGTCCGGTGAGGCCAGTGTTTCCTCAGGCAATAGAAACGAAATTGGTACCAATTATCCTCCTCAACAATACTTTGCTTCAACACCATCTCAAGCTCAGCCACAAGTGAAGAAAAAGAGAAACCTTCCCGGCAATCCAGACCCGGATGCTGAAGTGATAGCCTTGTCTCCCAAGAGTCTGCTGGCAACAAACAGGTTCATCTGTGAGATCTGCAACAAAGGGTTTCAAAGGGACCAGAATCTTCAACTTCACCGGAGGGGGCACAATTTGCCATGGAAGCTGAAGCAGAGAACAAACAAAGAGGTGAGGAAGAAGGTGTATGTGTGCCCAGAAGCCACGTGCGTGCACCATGACCCAGCAAGGGCACTTGGGGACCTTACTGGGATAAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGATAAGTGCTCCAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACATGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACACACAGGGCCTTCTGTGATGCATTGGCAGAGGAGAGTGCAAGAGCAAACCCACTTGTTCCCTCTCAAACACCCAGTTCTTCATCATCAGCATCTCACATACTGAATATCCAAACCCAGCTCAACAATAATCCCCATCATCTCCATTCTCTACAACTGAAGCAAGAGCATCAACAAAGCTTCAACCTCAGGCCAGAAATACCTCCTTGGCTAGCCTGTCCTCCTCCCCCTCTAGCTCCTGGTCCATCCACCACTGATCTCTCATCCCCATCATCATCTTCAATGTTCACCACAAGATTCGATCGGGACTTTTCACGAGCACCTCACGGGCAAGATCTGAGCCTCCATGAAAACCCTAACCCTACTAACCTTGGCCCCACCCTCCCTTCTGCTTACCAACCAGCGCCTTCCCCGCACATGTCAGCAACAGCCTTGCTGCAGAAAGCAGCCCAAATGGGTGCAACCATGACCAAAACTGCACCCATGACCAAAACTGGCTCTTCCAATACAACACCAGCCATGATTAGGACCCACCACCAGACTCACGTGCCTCATCCTGCTTCTGACTCTGCTGCCACCAATTCAATCTCAAGTAGTGGTCATTTTGGTTTGAATTTGTCATCACGTGAATCTGCAGTGCTACTCCCTCCTTCTGCTCCTTCTGCTACTACTGCTGCTGCTGCTGCTTCTTCCTCAGGTGTTCCTCCTCCTCCTCCCTTTCTTCTTCACGATGTTATGAGTTCTTTCTCTGCTACTTCTGGCGGGTTTGAAGGAACGTCTTTTGAGGATGCGTTTGGTGGGATTTTGAACTCGAAGAATAAAGATGAAAGCTTTCTTGATACCCTTAAAAAGACGACCACCCCCGTCGGCCATCTCAGTGGCGCCGCCGATGACGGTGGTGGGAAAGAAGGTTTGACGAGAGATTTCTTGGGCCTTAGACCTCTCTCTCACAACGAGATTCTCAGCATTGCTGGAATTGGGAACTGCATGAACCCCACCACCTCCCATGATCAACAGAATCAATCCCAAAACTCATGGCAAGGTTAG 1671 0.4877 MMKGLMFHQQQQQVVEENMSNLTSASGEASVSSGNRNEIGTNYPPQQYFASTPSQAQPQVKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEATCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARANPLVPSQTPSSSSSASHILNIQTQLNNNPHHLHSLQLKQEHQQSFNLRPEIPPWLACPPPPLAPGPSTTDLSSPSSSSMFTTRFDRDFSRAPHGQDLSLHENPNPTNLGPTLPSAYQPAPSPHMSATALLQKAAQMGATMTKTAPMTKTGSSNTTPAMIRTHHQTHVPHPASDSAATNSISSSGHFGLNLSSRESAVLLPPSAPSATTAAAAASSSGVPPPPPFLLHDVMSSFSATSGGFEGTSFEDAFGGILNSKNKDESFLDTLKKTTTPVGHLSGAADDGGGKEGLTRDFLGLRPLSHNEILSIAGIGNCMNPTTSHDQQNQSQNSWQG 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0678 556 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Prci13g0678 556 MobiDBLite consensus disorder prediction 21 74 - -
Prci13g0678 556 FunFam protein indeterminate-domain 12-like 69 137 - -
Prci13g0678 556 MobiDBLite consensus disorder prediction 21 62 - -
Prci13g0678 556 Pfam Zinc-finger double-stranded RNA-binding 90 112 IPR022755 -
Prci13g0678 556 MobiDBLite consensus disorder prediction 292 308 - -
Prci13g0678 556 MobiDBLite consensus disorder prediction 282 334 - -
Prci13g0678 556 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Prci13g0678 556 Gene3D Classic Zinc Finger 145 224 - -
Prci13g0678 556 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Prci13g0678 556 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 540 IPR031140 -
Prci13g0678 556 Gene3D Classic Zinc Finger 71 140 - -
Prci13g0678 556 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Prci13g0678 556 SMART c2h2final6 90 112 IPR013087 -
Prci13g0678 556 SMART c2h2final6 166 186 IPR013087 -
Prci13g0678 556 SMART c2h2final6 131 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0678 Prci-Chr13 5546174 5549565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0678 1 543 IDZ Gene Family AT1G55110 47.849 2.08e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci13g0678 zf-C2H2_jaz 8.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0678 K25870 - jre:109011738 633.639