Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0629 ATGGAGCCTCGAGTAGGGAACAAGTTTCGTCTTGGCCGGAAGATTGGTAGCGGATCGTTTGGAGAGATCTATCTCGGTACTAATATTCAGACTAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAGACCAAACACCCTCAGCTGTTGTATGAATCGAAGCTGTATAAAATACTGCAAGGAGGAACTGGAATCCCAAATGTGAGATGGTTTGGTGTTGAAGGAGACTACAATGTGCTTGTCATGGATTTGCTAGGGCCCAGTCTTGAGGATTTATTCAATTTTTGTGGCCGAAAATTGTCACTTAAAACTGTTCTTATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCAAAATCATTTTTACATCGGGACATAAAGCCAGACAACTTCCTCATGGGTTTAGGAAGGCGTGCGAACCAAGTATACATCATTGACTTTGGTCTTGCAAAGAAATACAGGGACACTTCTACCCACCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAACAAAGTCGCAGGGATGACTTAGAGTCACTTGGATATGTTCTTATGTACTTTTTAAGGGGAAGTCTTCCTTGGCAGGGACTGAAAGCAGGTAATAAGAAGCAGAAGTATGAGAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGATATCCCTCAGAATTTGCATCATACTTCCATTACTGTCGGTCTCTGCGTTTTGATGATAAGCCAGATTATGCTTATCTGAAGAGACTTTTCCGTGACCTGTTTATTCGTGAAGGATTTCAGTTTGACTATGTCTTTGATTGGACCATCTTGAAATATCAGCAATCCCATATTTCTACTCCTCCTGGACGTGCTATTGTTCCTGGTGCTGGACCAAGTACTGGCATGCCACCAGCTGTTGCAAATGCTGATAAACATTCAGGTGGGGAAGACGGCAGACACACTGGTTGGTCTTCAGCAGATCCTACTCGTAGGAGACATTCAGGACCTATTGCGAATGATGTCATCTTATCTAGGCAAAAGGCTGCAGTTCCAAGTGACTCGAATGTATCAAAAGATGGAATGCTGTCTGGTTCTAATTTTTTCCGTCCAAGTGGATCTTCAAGGCGAGCTGCTGTTTCTAGCGGCCGGGATGGAGCTACTGTTGGCAGTGAGCAAGAGCCTCCTCGGGCTCTTGCTGTTGATGCAAGTCCAGGAGCACTACGTAAAATCTCTGGTGCTCAAAGAAGTTCGCCTCTTGTATCAGTGGAGCAGAGCAGAACGTCATCTGGCAGGAGCCCGGCAAACATCAAGAATTTTGAGTCCACTCTGAAAGGCATTGAGAGCCTTCATTTCAATGACGAAAGGGTACAATACTAG 1425 0.4337 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCGRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSHISTPPGRAIVPGAGPSTGMPPAVANADKHSGGEDGRHTGWSSADPTRRRHSGPIANDVILSRQKAAVPSDSNVSKDGMLSGSNFFRPSGSSRRAAVSSGRDGATVGSEQEPPRALAVDASPGALRKISGAQRSSPLVSVEQSRTSSGRSPANIKNFESTLKGIESLHFNDERVQY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0629 474 CDD STKc_CK1_delta_epsilon 8 282 - -
Prci13g0629 474 FunFam Putative Casein kinase I 1 85 - -
Prci13g0629 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Prci13g0629 474 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g0629 474 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Prci13g0629 474 MobiDBLite consensus disorder prediction 430 452 - -
Prci13g0629 474 MobiDBLite consensus disorder prediction 307 413 - -
Prci13g0629 474 FunFam Casein kinase I isoform delta-like 1 308 - -
Prci13g0629 474 MobiDBLite consensus disorder prediction 425 452 - -
Prci13g0629 474 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g0629 474 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Prci13g0629 474 MobiDBLite consensus disorder prediction 328 343 - -
Prci13g0629 474 MobiDBLite consensus disorder prediction 364 396 - -
Prci13g0629 474 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g0629 474 PANTHER CASEIN KINASE-RELATED 9 372 - -
Prci13g0629 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0629 Prci-Chr13 5046938 5051843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0629 8 213 MAP Kinase Kinase Kinase AT3G06030 27.727 2.79e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Prci13g0629 Pkinase 3.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0629 K02218 - gmx:100778165 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g0629 13 5046938 5051843 Prci12g2177 12 39214236 39221456 CCT