Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0626 ATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATTGCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTCAAGGATCCCGAGTTTGCGCCTTTTCTCACTCATCGTTCCAACATTGACCTCAAGGATAAATGGAGGAACTTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGACAAAGCTAGGAATCCAAAGATTAAAGCTGTTATGCCTGCTCCAGCTGCTAGTTTTCAAAATGCCACTTCTGTTACTTCAGTTCGTCAAAGTGCATCTTCTGATGCTGTCATTGATGATGCTTCTCAAAAGGCACAGGATGTGAAAAATGCTCCACGGTATAATGGAATGGTTTTTGAAGCTCTGTCAACGATAAAAGATACTAATGGTTCTGACATAAATACCATTGTTAGTTTCATTGAGAAAAGGCATGAGGTTCCTCCAAATTTCAGAAGGGCATTAAGTACGAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGAGTGCTTATTATTGGAGGAAGGAATGTCTCAGATGCAGTTTTGTGGCAATGACTCGACAGAGGACATTAGGTGCAGGAAGGGAAAAGAAGCTACTCTTAAATTCGCCTGTTGCTAGGCTGGGAGATTCTCTATCCCCTTTCTTGTTTTCAGCAATGTTGAAATCAACAAGACTTCTGGTTATTGCTAAAGGAAACGCTTTGTTGGACCTACGGCTTACCTACACACTTCACGTGATTTACCCTTGGCCCGTTAAACAAGAGCCCACTAGCCATAGATACAAAATTGTTACAAGATAA 822 0.427 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVNTAAQGSKDKARNPKIKAVMPAPAASFQNATSVTSVRQSASSDAVIDDASQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINTIVSFIEKRHEVPPNFRRALSTRLRRLVAQGKLEKSAYYWRKECLRCSFVAMTRQRTLGAGREKKLLLNSPVARLGDSLSPFLFSAMLKSTRLLVIAKGNALLDLRLTYTLHVIYPWPVKQEPTSHRYKIVTR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0626 273 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Prci13g0626 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Prci13g0626 273 FunFam Telomere repeat-binding factor 1 8 87 - -
Prci13g0626 273 FunFam Telomere repeat-binding factor 1 2 58 - -
Prci13g0626 273 SMART h15plus2 114 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci13g0626 273 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 193 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci13g0626 273 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Prci13g0626 273 SUPERFAMILY "Winged helix" DNA-binding domain 117 177 IPR036390 -
Prci13g0626 273 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Prci13g0626 273 PANTHER SINGLE MYB HISTONE 4 1 182 IPR044597 GO:0003691
Prci13g0626 273 Pfam linker histone H1 and H5 family 118 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci13g0626 273 SMART sant 4 59 IPR001005 -
Prci13g0626 273 CDD SANT_TRF 6 56 - -
Prci13g0626 273 Gene3D - 2 58 - -
Prci13g0626 273 Gene3D - 112 182 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0626 Prci-Chr13 5027656 5032397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0626 1 181 Single Myb Histone (SMH) Gene Family AT1G72740 58.152 2.78e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci13g0626 Linker_histone 4.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0626 K09422 - zju:107425232 256.529