Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0624 ATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATTGCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTCAAGGATCCCGAGTTTGCGCCTTTTCTCACTCATCGTTCCAACATTGACCTCAAGGATAAATGGAGGAACTTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGACAAAGCTAGGAATCCAAAGATTAAAGCTGTTATGCCTGCTCCAGCTGCTAGTTTTCAAAATGCCACTTCTGTTACTTCAGTTCGTCAAAGTGCATCTTCTGATGCTGTCATTGATGATGCTTCTCAAAAGGCACAGGATGTGAAAAATGCTCCACGGTATAATGGAATGGTTTTTGAAGCTCTGTCAACGATAAAAGATACTAATGGTTCTGACATAAATACCATTGTTAGTTTCATTGAGAAAAGGCATGAGGTTCCTCCAAATTTCAGAAGGGCATTAAGTACGAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGATACAAAATTGTTACAAGATAAAGAAGGACGCCCCATCTGGTGCAAAAACACTTCCAATGAAAGAAAAGGACATCTGGCAACATCAACCACCAGCCTCTAGTTTGGTGCCGTCTTATGAGACCTTCAAGGATGCTGCTGATACTGCAGCCTACAGACTCGCAGAAGCTGAGAACAAATCATTTCTGGCTGCTGAGGCAGTCAAGGAGGCGGAAAGACTTGCAAAATTTGCTGAAGAAGCTGATGCAGTATTACAACTAGTGAAAGAGATTTATGAACAATGTACTAATAAACAGTTCGCGTGGTGA 831 0.4296 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVNTAAQGSKDKARNPKIKAVMPAPAASFQNATSVTSVRQSASSDAVIDDASQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINTIVSFIEKRHEVPPNFRRALSTRLRRLVAQGKLEKIQNCYKIKKDAPSGAKTLPMKEKDIWQHQPPASSLVPSYETFKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKFAEEADAVLQLVKEIYEQCTNKQFAW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0624 276 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Prci13g0624 276 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Prci13g0624 276 Pfam linker histone H1 and H5 family 118 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci13g0624 276 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci13g0624 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Prci13g0624 276 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci13g0624 276 FunFam Telomere repeat-binding factor 1 2 58 - -
Prci13g0624 276 Gene3D - 112 201 IPR036388 -
Prci13g0624 276 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Prci13g0624 276 SUPERFAMILY "Winged helix" DNA-binding domain 116 192 IPR036390 -
Prci13g0624 276 Gene3D - 2 58 - -
Prci13g0624 276 PANTHER SINGLE MYB HISTONE 4 1 273 IPR044597 GO:0003691
Prci13g0624 276 FunFam Telomere repeat-binding factor 1 8 87 - -
Prci13g0624 276 SMART sant 4 59 IPR001005 -
Prci13g0624 276 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0624 Prci-Chr13 5027656 5033038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0624 1 276 Single Myb Histone (SMH) Gene Family AT1G17520 51.701 5.23e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci13g0624 Linker_histone 9.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0624 K09422 - pvy:116109826 370.933