LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g0617	ATGCATCAATTTTTTCTTCCCTTTCGAGGATTCTGTGCTCGAAAAGGGATTGAAGCAAAGGAATTGGTTCTGCATGACCTTGATGTTTCAAGCGCCCTTACTTATTATCTCAACAACAACTCTATCAGAAACATCGTTGTTGGTGCTTCTCACCGTAATGTTCTTACGAGGAAATTCAAAGATGCAGATGTCCCCACTTGCTTAATCAAGTCTTTGCCTGAGTCCTGCGTAATATACGTTATATCAAAAGGAAAAGTACAAAATATCAAACCAACAGGTCAAAATCAAAATTGTTGCAGCATAACAGCTAAATCTATAAAAGACAGTCACCGAGGAAATTCTCAAGCTGATGATTCACAGAGGCTTCCTAACATCCCTGATTCTGAAGAAGAAAACAGAGATTCAGTCGGCCATGGACGTGGACAAGGCTCAGGCCTTGATGGGGCATCAAATAGTCAAAATCATACCTCTACAGATAATTCACAACATGAACCAAATGGAGAAGCTGGTTCACCAGTGTCAAATGAAAGTCCATATTCCTTCATTAGTGACATGTCAGGGCCGAATAGTTTTCAATCAAATGATAAGTTCCACGAAAACCAAGAAGCATTCGAGAACTTGGACAGTTGCTGGAGCCTATCTTCAAAAAGCCCAAAAGCCTTGGAGAGCGAAATAAGGAAATTAAAATTGGAACTGAGAAAAACAATGGAGAAATATACTTTAGCTTGCAAAGAAGCTATTGAAGCAAAAAAGAAGGCAATGGAGCTTGAACAGATTAGGGAAGAAGAAGGACGCAACCTAGAAAAAGCTAGGCTCGCTGAAGAGGCTGCATTGGCTTTGACAGAGGTAGAGAGAGAGAAAACCAGGGCTGCATTGGAGTCAGCACAAATGGCAAAACTCCTAGCAGAAATGGAGACCGAGAAGAGAAAGCAGGCAGAAACAAGAGCCATGCATGAAGAAGAGGAGAAGAAAAAAGCAGTAAATGCACTTGCACAAAATCTTATCCGATGTAGAAGATATGATATTTCAGAAATTGAGGTAGCGACAAACTACTTTGACAATTCATTGAAAATTGGTGAAGGTGGATATGGGCCTGTTTTTAGAGGGATGCTCGATCACACTGTTGTTGCCATCAAGGTCTTGAGACCAGACATAGCATCTGGGGAGAAGCAATTTTTTCAAGAGGTTGAAGTTTTGAGCACCATAAGACATCCTAACATGGTTCTCCTCCTAGGTGCCTGCCCAGAGTATGGATGCCTTGTGTACGAATATTTGGAAAATGGCAGCTTAGAAGACCGTCTCTTCCAGAAAGATAACACCCCACCAATTCCGTGGAAACTTCGATTCCAGATTGCAGCTGAAATTGCCACTGGCCTTAACTTCCTTCACCAAACGAAGCCTGAACCACTGGTGCATCGTGACCTCAAGCCTGCAAATATACTCCTAGACAAGAACTACAAGACCAAGATTAGTGATGTGGGTTTGGCCAGGCTTGTTCCTCCATCTGTAGCTGATAAAACCACTCAGTATCGTATGACAGCTGCAGCGGGTACATTCTGCTATATTGACCCTGAGTATCAACAAACAGGATTGTTGGGTGTAAAATCAGACATATATTCCTTAGGTGTACTGCTGCTTCAGATCCTTACAGCAAAGCCTCCAATGGGTTTGTCCCACCTGGTTGAAAAGGCTATCCAAACAGGCAAATTTCCGGAGGTGCTTGATCCAAATGTGACAGATTGGCCTGTTGAAGAGGCTTTATCATTCGCTATGTTGGCTTTGAAGTGTTGTGAGTTGAGGAAACGAGACAGACCAAGTCTTGGTTCAGTCATTTTGCCGGAGCTAGGTCGACTCAAAGATTTGGAAGAGGACAGAGACATGAAAGAAGACACTGATAGCCCTGACGGATTTGATAGCCAGAACCGAGAGGTAATGAGTAGCAACGTTAAAGTGGAAATGGAGAAAAGGCAGAGGAAACCCATGAAATCCCTGAGCAGCAAATGCAGTAGCAGCAGAAGTAAAATAAGAGAAGGAAGCCTCATTGCAGCATCAGGAAAACAAGTTGAGGTTGCAAATAGGCAAGATACTGATGAGACAGGAAGCTGCTGGTCTTTTGGAAGTTGCTCCATTATTCACCCCAGTTCTTTTTAA	2151	0.4272	MHQFFLPFRGFCARKGIEAKELVLHDLDVSSALTYYLNNNSIRNIVVGASHRNVLTRKFKDADVPTCLIKSLPESCVIYVISKGKVQNIKPTGQNQNCCSITAKSIKDSHRGNSQADDSQRLPNIPDSEEENRDSVGHGRGQGSGLDGASNSQNHTSTDNSQHEPNGEAGSPVSNESPYSFISDMSGPNSFQSNDKFHENQEAFENLDSCWSLSSKSPKALESEIRKLKLELRKTMEKYTLACKEAIEAKKKAMELEQIREEEGRNLEKARLAEEAALALTEVEREKTRAALESAQMAKLLAEMETEKRKQAETRAMHEEEEKKKAVNALAQNLIRCRRYDISEIEVATNYFDNSLKIGEGGYGPVFRGMLDHTVVAIKVLRPDIASGEKQFFQEVEVLSTIRHPNMVLLLGACPEYGCLVYEYLENGSLEDRLFQKDNTPPIPWKLRFQIAAEIATGLNFLHQTKPEPLVHRDLKPANILLDKNYKTKISDVGLARLVPPSVADKTTQYRMTAAAGTFCYIDPEYQQTGLLGVKSDIYSLGVLLLQILTAKPPMGLSHLVEKAIQTGKFPEVLDPNVTDWPVEEALSFAMLALKCCELRKRDRPSLGSVILPELGRLKDLEEDRDMKEDTDSPDGFDSQNREVMSSNVKVEMEKRQRKPMKSLSSKCSSSRSKIREGSLIAASGKQVEVANRQDTDETGSCWSFGSCSIIHPSSF	716

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g0617	716	PANTHER	OS02G0152300 PROTEIN	1	670	-	-
	Prci13g0617	716	FunFam	Os07g0541700 protein	425	516	-	-
	Prci13g0617	716	MobiDBLite	consensus disorder prediction	622	641	-	-
	Prci13g0617	716	Coils	Coil	253	273	-	-
	Prci13g0617	716	MobiDBLite	consensus disorder prediction	123	137	-	-
	Prci13g0617	716	MobiDBLite	consensus disorder prediction	622	637	-	-
	Prci13g0617	716	MobiDBLite	consensus disorder prediction	145	195	-	-
	Prci13g0617	716	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	324	424	-	-
	Prci13g0617	716	ProSiteProfiles	Protein kinase domain profile.	352	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0617	716	SUPERFAMILY	Protein kinase-like (PK-like)	333	610	IPR011009	-
	Prci13g0617	716	Gene3D	Phosphorylase Kinase; domain 1	329	424	-	-
	Prci13g0617	716	SMART	serkin_6	352	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0617	716	MobiDBLite	consensus disorder prediction	106	195	-	-
	Prci13g0617	716	Pfam	Protein kinase domain	355	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g0617	716	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Prci13g0617	716	Gene3D	Transferase(Phosphotransferase) domain 1	425	645	-	-
	Prci13g0617	716	MobiDBLite	consensus disorder prediction	663	677	-	-
	Prci13g0617	716	Coils	Coil	301	329	-	-
	Prci13g0617	716	MobiDBLite	consensus disorder prediction	652	677	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g0617	Prci-Chr13	4979500	4986161	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g0617	21	624	Receptor kinase-like Gene Family	AT5G12000	54.281	0.0	604

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Prci13g0617		Pkinase	9.5e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g0617	-		-	pcin:129290405	1383.62