Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0611 ATGGGAGTTCTACCTCAACAACGTCATAATACAAAGCCATTGAGTTTCCAGTTTCAAGATCAGGATTCATCTTCTACTCAATCAACTGGTGAATCTTATCCTGAAGTTGGTTCTGGTCAATCAGGTTATATTTCTATCCAGTGTAGCCATTCTTCTGCACATTCAAAATGTAGCGCAAGTGTAGGAGGTCTCATCAAATCATCGTTGGGGAGTCAGAGTTTTTGTTTTCCTCCTTTCCCAGTGGTCCATAACCAATCAATTGCTCATATTGCACTTCGCTATGCTGAACCGTGCTTTGATGGTGTACTTGCTGCATTTGTGCCACAGTCCAAGCTTCATCAGGCCCAACTCATGGGATTAACTTCTGTTCGAGTTCCTCTTCCTTTTGATCTGACAGAAGAACCTATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGTGCCAAACTCGAGGCACAAAACAAGCTCATCAAAGCTCGGAAACCATATCTTCACGAGTCCCGGCATCTGCATGCATTAAGGAGGGCTAGAGGTTCGGGTGGTCGCTTTCTCAACAGCAGACAACTCCAGGAAGCAAACTTCAAAACAGAGAGTCGCGGCCTGAAAGTCTCAGATGCTACTATGTTGAACCTAGGTGGCAATATGTCAGAATCCAAAGTTCATCCTGATGCAGAAAACTACAGAGATGGTCCATGCCCCACCGGTTCTGACATCACAAGTGCATCTAATAGTGATGGCATCTTCCAGCGACGTGAGTCCAGTTTCAGGCTCTCTAGTTACCCTGCTCACATTGGATGGAACATGCAAGGCTACTCGGCTGGTCCTGGCACTGCTGGCAGCGGCGGTAATCAGCAGCATGTGTCTGTTCTCATGTGA 894 0.462 MGVLPQQRHNTKPLSFQFQDQDSSSTQSTGESYPEVGSGQSGYISIQCSHSSAHSKCSASVGGLIKSSLGSQSFCFPPFPVVHNQSIAHIALRYAEPCFDGVLAAFVPQSKLHQAQLMGLTSVRVPLPFDLTEEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKARKPYLHESRHLHALRRARGSGGRFLNSRQLQEANFKTESRGLKVSDATMLNLGGNMSESKVHPDAENYRDGPCPTGSDITSASNSDGIFQRRESSFRLSSYPAHIGWNMQGYSAGPGTAGSGGNQQHVSVLM 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0611 297 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 189 IPR001289 GO:0003700|GO:0006355
Prci13g0611 297 Gene3D - 132 193 - -
Prci13g0611 297 SMART cbf3 131 192 IPR001289 GO:0003700|GO:0006355
Prci13g0611 297 ProSitePatterns NF-YA/HAP2 subunit signature. 137 157 IPR018362 GO:0003677|GO:0016602
Prci13g0611 297 ProSiteProfiles NF-YA/HAP2 family profile. 132 192 IPR001289 GO:0003700|GO:0006355
Prci13g0611 297 MobiDBLite consensus disorder prediction 1 38 - -
Prci13g0611 297 MobiDBLite consensus disorder prediction 8 38 - -
Prci13g0611 297 PRINTS CCAAT-binding transcription factor subunit B signature 135 157 IPR001289 GO:0003700|GO:0006355
Prci13g0611 297 PRINTS CCAAT-binding transcription factor subunit B signature 166 189 IPR001289 GO:0003700|GO:0006355
Prci13g0611 297 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 261 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0611 Prci-Chr13 4939331 4945862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0611 5 295 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.108 2.12e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Prci13g0611 CBFB_NFYA 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0611 K08064 - gmx:100500765 369.007