Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0572 ATGCCTTCCACAAGACTTCTCCTCAGAAACCTCGTTCTTGGCTGTTTCAAGCCCAACCCTCAATCTTTGTCTTCTGCTAACAATAATCATAATCGTCAAAAGAATAAGTGCTTGGCCTCCAGAAAGGTGAGCTCGAGAAGACTATCTCTCTCTGATCTCAGCAATTCTTCTTCGCTCTCTATCATGAGTGATCTCTCAAACTCTGTTCTGGGTTCAAATCTTCATATCTTCACCCTCAAGGAGCTCAAGGAGATCACCCACAATTTCTGCAAATCCAGTGTTCTCGGTGAAGGTGGGTTTGGCAAGGTTTATAAAGGCTTCATTGATGACAAGCTCCGGCCTGGTCTGGAAGCTCAAGTTGTTGCAGTTAAGGTTCTGGACTCAGATAGCAAACAGGGACACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAACTGAAGCATCCCCATCTGGTGAACCTGATTGGATATTGCTGTGAAGATGAACACAGGCTTCTGGTTTACGAATACTTGGAGAGAGGCAATCTAGAGAACAAGCTTTTCAAGGGTTACCTAGCAGCCTTGCCTTGGCTCACAAGAATCAAGATAGCAATTGGGTCCGCAAAAGGACTTGCTTTCCTTCACGAAGAAGCACAACCTGTCATTTACAGAGACGTCAAGGCCTCAAATATCTTATTAGACGCAGATTACAATGCCAAGCTCTCTGATTTTGGTCTCGCCATAGACGGCCCGGAAGAAGACCAAATTCACATCACAACTCGTGTGATGGGTACTCATGGCTATGCTGCTCCTGAGTACATCACCTCAGGGCATTTGACGACCATGAGCGATGTGTATAGCTTTGGGGTGGTTCTGCTAGAGCTGATTACAGGGAAAAGATCAGTGGATAAGAACCGTCCGATGAGAGAACAGGATTTGGTGGAGTGGGCGAGACCATTGTTAAAGGACCCTAATAAGCTAGAAAGGATAATGGACCCGAGATTAGAGGGTCAGTACTCTTATGAAGGGGCTAGAAAAATGGCGCTTCTGGCTCACCAATGTCTGAGTCAACAACCCAAGTCTAGACCATCCATGAGAACCGTGGTTAAGACCTTAGAGCCACTAATGAACCTGACTGATATCCCGGTGGGCTGCTTTGTCTATGTGGTCCCCAGTGAAGGAACCGAAGAGAAAAAACCAGTTCAATGTGGGGATATAGAGATCAGAAGAAGTGGGGATGAGTGTGAACAGGAGAAGAAGCAGGAGATGGAGCAGACGAAGACGAAGAAGAAGAAGGTGATGATGATGGAGGGTCTTCACAAGAGTCGGAAAGGTCAAAGACGCAGACGTCAGATTAAGCTTCTGAGATCATCTGGTTCTGTTCATTCGGATACTGCTCTGTACAAAGTTCTTGGTACTAGGCTTTACTCTCCTAAGCAAGCACCGTGA 1431 0.4633 MPSTRLLLRNLVLGCFKPNPQSLSSANNNHNRQKNKCLASRKVSSRRLSLSDLSNSSSLSIMSDLSNSVLGSNLHIFTLKELKEITHNFCKSSVLGEGGFGKVYKGFIDDKLRPGLEAQVVAVKVLDSDSKQGHREWLAEVIFLGQLKHPHLVNLIGYCCEDEHRLLVYEYLERGNLENKLFKGYLAALPWLTRIKIAIGSAKGLAFLHEEAQPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEEDQIHITTRVMGTHGYAAPEYITSGHLTTMSDVYSFGVVLLELITGKRSVDKNRPMREQDLVEWARPLLKDPNKLERIMDPRLEGQYSYEGARKMALLAHQCLSQQPKSRPSMRTVVKTLEPLMNLTDIPVGCFVYVVPSEGTEEKKPVQCGDIEIRRSGDECEQEKKQEMEQTKTKKKKVMMMEGLHKSRKGQRRRRQIKLLRSSGSVHSDTALYKVLGTRLYSPKQAP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0572 476 Pfam Protein tyrosine and serine/threonine kinase 93 366 IPR001245 GO:0004672|GO:0006468
Prci13g0572 476 PANTHER OS01G0588500 PROTEIN-RELATED 39 369 - -
Prci13g0572 476 Gene3D Phosphorylase Kinase; domain 1 29 171 - -
Prci13g0572 476 FunFam Serine/threonine-protein kinase BIK1 56 171 - -
Prci13g0572 476 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 172 375 - -
Prci13g0572 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Prci13g0572 476 ProSitePatterns Protein kinases ATP-binding region signature. 95 124 IPR017441 GO:0005524
Prci13g0572 476 CDD STKc_IRAK 95 369 - -
Prci13g0572 476 SMART serkin_6 89 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g0572 476 Gene3D Transferase(Phosphotransferase) domain 1 172 375 - -
Prci13g0572 476 ProSiteProfiles Protein kinase domain profile. 89 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g0572 476 SUPERFAMILY Protein kinase-like (PK-like) 64 367 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0572 Prci-Chr13 4625571 4627718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0572 75 418 Glycoside Hydrolase AT3G07070 46.398 8.19e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci13g0572 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0572 - - gmx:100790454 615.92