Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0547 ATGCAGAATCACAGGCTGAAGCAGCAACAGCAAGCTTTGATGCAGCAAGCTCTTCTTCAACAACAGTCTTTGTACCACCCTGGCCTCCTAGCTCCTCCTCAGATTGAGCCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACATACACAGGTAACTGAACCGCTTCTGCAAGAGGTTTTTGCAAGTACTGGTCCTGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAATCATCCTATGGATTCATTCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACCTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTCGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGCTCTAGAGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGACAGATACGCTGCAACTGGGCAACTAAAGGTGCTGGTTCTAATGAAGACAAGCAAAACTCTGACACAAAAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTCTATGTGGGCAATCTTGCTCCAGAGGTTACCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGCATCCAGCGGGATAAAGGGTTTGGCTTTGTGAGGTATAGTACTCATGCTGAAGCAGCTCTGGCTATCCAGATCGGAAATGCCCAGTCTGTTCTCTGTGGAAAACCTATTAAGTGCTCCTGGGGTAGCAAGCCCACTCCACCGGGAACTGCTTCGAATCCTCTCCCCCCTCCTGCAGCTGCACCTCTGCCAGGCATTTCTGCAACTGATCTTCTGGCGTACGAGAGACAGCTAGCAATGAGCAAGATGGGTGGTGTACATGCCCTTATGCATCCCCAAGGACAGCACCATCTTAAACAGGCGGCGATTGGAGGAAGCCAGGCATTGTATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA 1254 0.4697 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSEDGKETTNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRIQRDKGFGFVRYSTHAEAALAIQIGNAQSVLCGKPIKCSWGSKPTPPGTASNPLPPPAAAPLPGISATDLLAYERQLAMSKMGGVHALMHPQGQHHLKQAAIGGSQALYDGGFQNVAAAQQMMYYQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0547 417 Gene3D - 136 238 IPR012677 -
Prci13g0547 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Prci13g0547 417 SMART rrm1_1 54 123 IPR000504 GO:0003723
Prci13g0547 417 SMART rrm1_1 260 330 IPR000504 GO:0003723
Prci13g0547 417 SMART rrm1_1 139 212 IPR000504 GO:0003723
Prci13g0547 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 317 IPR000504 GO:0003723
Prci13g0547 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Prci13g0547 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Prci13g0547 417 Gene3D - 239 338 IPR012677 -
Prci13g0547 417 CDD RRM2_PUB1 137 216 - -
Prci13g0547 417 SUPERFAMILY RNA-binding domain, RBD 250 341 IPR035979 GO:0003676
Prci13g0547 417 SUPERFAMILY RNA-binding domain, RBD 132 220 IPR035979 GO:0003676
Prci13g0547 417 Gene3D - 1 135 IPR012677 -
Prci13g0547 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 337 - -
Prci13g0547 417 CDD RRM1_PUB1 55 125 - -
Prci13g0547 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Prci13g0547 417 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
Prci13g0547 417 MobiDBLite consensus disorder prediction 215 258 - -
Prci13g0547 417 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Prci13g0547 417 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Prci13g0547 417 FunFam Oligouridylate-binding protein 1C 236 338 - -
Prci13g0547 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 334 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0547 Prci-Chr13 4249666 4256258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0547 54 328 Eukaryotic Initiation Factors Gene Family AT3G16380 26.370 1.05e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0547 K13201 - gmx:100781227 790.415