Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0511 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCGGCGGCCGGGACGGGGAAGTCTCGCCGGCTCACCGCTGATTATCTCTGGCCAGATTTGAAGAAGCTCGGGTCTGGTGGGAGGTTTTCCAAGCCTCTGAAGCCTGAAGCTGTCATCGACTTGGACGATGATTTTGAAGCTGATTTCAGGGAATTCAAGGATGATTCCGATATCGATGTGGATGAAGATGATGAAGATTTGATGATTGATGTCAAGCCCTTTGCTTCATCCACTGCTAAGCCCTCCAAGAGGCCCCTGTCTCGTGGATCTGCTGCCGCAAAAGCTGAGAAATCTGATGGGCAAACTGAGAAGTCTTTGAAAAGGAGGAGGAAGAATCAATTCAGGGGAATCCGCCAACGTCCATGGGGTAAATGGGCAGCTGAGATCCGTGATCCAAGAAAGGGGGTTCGCGTCTGGCTTGGAACCTTTAATACTGCTGAAGAAGCTGCACGAGCTTATGATGCTGAGGCAAGAAGGATCCGTGGCAAGAAAGCCAAGGTTAACTTCCCTGATGAGGTCTCAGGTCCTTCCTCGAAGCGCCTCAAGGCCAAAGTTGAGAAGCCGCTTCCAAAGGCCAATCTGAACTCTGCTCAGCCCAATTTGACCCAAAACTTCAATGTTGGAACCAATCTGGAGGACTACTACTACTCTATGGGTCTGATGGAACAAAAACCTCAGATCAACCAGTATGCTGCAGCTGCTAACGTGGGATCGTTTCCTGAGACCAACAATGTGGTCCCATCACTCTCATCATCTGATGATGTCGCGGTTTATTTCAGTTCTGATCAGGCGAGCAACTCATTCGACTACTCGGATTTTGGGTGGGGCGAACAGGCTCCAAAGACCCCAGAGATCTCATCCATGCTTTCTGGTGAATCTCAGTTTCTGCAAGATGCTAACCTGAACAACAACAACAACATGCAATACTCGAACTCTCAGAACGCAGGAAATGGTCCTGCAAAGACTCTGTCGGATGAGCTTGCTGACATTGAATCCCAGCTGAACTTCTTCCAGACACCTTATCTTGAAGGAAGCTGGGATGATGCTTCACTTGGAACTCTGCTTAGTGGAGACACAACACAGGATGCTGCTAACCCAATGAGCCTCTGGAGCTTTGATGACCTTCCCGCATCCATGATGGCGGGAGTTTACTGA 1194 0.4966 MCGGAIISDFIPAAAAGTGKSRRLTADYLWPDLKKLGSGGRFSKPLKPEAVIDLDDDFEADFREFKDDSDIDVDEDDEDLMIDVKPFASSTAKPSKRPLSRGSAAAKAEKSDGQTEKSLKRRRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEVSGPSSKRLKAKVEKPLPKANLNSAQPNLTQNFNVGTNLEDYYYSMGLMEQKPQINQYAAAANVGSFPETNNVVPSLSSSDDVAVYFSSDQASNSFDYSDFGWGEQAPKTPEISSMLSGESQFLQDANLNNNNNMQYSNSQNAGNGPAKTLSDELADIESQLNFFQTPYLEGSWDDASLGTLLSGDTTQDAANPMSLWSFDDLPASMMAGVY 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0511 397 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Prci13g0511 397 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Prci13g0511 397 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Prci13g0511 397 MobiDBLite consensus disorder prediction 85 126 - -
Prci13g0511 397 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Prci13g0511 397 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Prci13g0511 397 PANTHER DNA-BINDING DOMAIN 100 278 IPR044808 GO:0003700|GO:0009873
Prci13g0511 397 MobiDBLite consensus disorder prediction 314 333 - -
Prci13g0511 397 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Prci13g0511 397 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Prci13g0511 397 MobiDBLite consensus disorder prediction 314 335 - -
Prci13g0511 397 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Prci13g0511 397 Pfam AP2 domain 127 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0511 Prci-Chr13 3931999 3934933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0511 1 397 AP2-EREBP Transcription Factor Family AT1G53910 48.537 1.91e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci13g0511 AP2 3.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0511 K09286 - cave:132186622 424.476