Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0504 ATGACCAAAGTAAAACAAGCCTTCGCCGGAATATCCCAATATTACGGCAAGAGCATTCCCATGTCCAAAAAGAACAAGAAGCTCTTCTACTTGGCCTTCTTCACTTTTCTGCTTCTCGTTTCCATTATTACTGTTGCCATTGTCGTCCGAGTTAGCACTGACAATGTTCCTTTCACCCGATCACACGCCGTCGTCAAAGTCTCTTGTAGTTCCGCATTGTACCCTGAACTTTGCTTCTCTGCCATTGCCGCCGAACCCGGCTTCACCGAGAAAGTCTCTTCGCACAAAGACGTCATACAACTGTCCCTTAACATCACTATCAGAGCCGTACAGAATAACTCCGTCTCCCTCAAGAAGCTCCAAACGAGAGCAGACCTCACAAAGAGAGCTCAAACCGCTCTTGAAGATTGTTTGAAGATCATTGACCACACCCTCTATGCACTTCGCGGGTCCATCTCGTATCTCAACGACTCCAGTTATCACGCCGATGACCTCAAGACTCTCGTCAGCTCCGCCATAACGGACCAAGAAACCTGCCTGGACGGATTCTCCCACGATGACAAGGACAGGAACGTGAGGGAAGGACTGGGGGACGGGCACTTGAACGTGGAACGAATGTCCAGCAACGCGTTGGCGATGATCATGAACATGACCGACACTGAAGATTCCATTACTAGCGGAAAAATGATGGAAGTAGAGGAAGAGGATGGGATTACGTGGCCGGAGTGGATTTCGACGGCAGACCGTAGGCTTCTACAAGCTTCAACAGTGGATGCAGATGTGGTGGTCGCAGCAGACGGAAGCGGGAACTACACGACGGTGTCGGAGGCGGTGGCAGCAGCGCCGGAGCAGAGTAGCACCAGGTATGTGATAAGTATAAAAGCGGGGGTGTACAGTGAGATCGTGGAAGTGCCGAGTGAGAAGACGAATATCATGTTTGTGGGAGATGGAGCAACGACCACTATCATCACAGGAAGCCAAAATGTTGTTGACGGGAGCACAACCTATAGTTCTGCCACAGTGGCGATAGAAGGAGATGGATTCTTGGCGAGAGACATAACGTTCGAGAACACGGCGGGTCCGACGAAGCACCAAGCGGTGGCTCTGAGAGTGGAAGGCGATCTCTCAGCATTCTACAGATGCAATTTTCTTGGATACCAGGACACTCTCTACGTCCGGATCAATCGGCAGTTCTTCGTGAACTGCCTCGTCGAAGGCACCGTCGACTTCATCTTTGGCAATTCCGCTGTCGTGTTCCAATACTGCGACCTCCGAGCTCGGCTTCCCTTATCAGGACAGAAGAACGTAGTCACTGCACAAGGACGAGTAGACCCCAACCAGAACACCGGCATTGTCATCCAAAATTGCACCATCAGAGCCACTCAGAGTCTGGAGGCAGCGAATGGAAGCGTGGAATCGTACCTTGGTAGGCCATGGAAGGAATACTCGAGGACAGTGATAATGGAGAGTTATATAAGCGATATAATAAACCCAGCTGGGTGGTTGGCTTGGAATGGGACGTTTGCATTGGACACTCTGTTCTATGGCGAGTATCAGAACACTGGACCTGGTGCTAATACTTCTCAAAGAGTTCATTGGCAAGGCTTTAGGGTTATTACCAGTGCTTCCGAAGCTCTAACTTTCACTCCTGGAAGCTTCATTTCTGGCTCAACCTGGTTGGCCTCTACTGGGTTTCCATATGCCCTTGGACTTTAA 1716 0.5035 MTKVKQAFAGISQYYGKSIPMSKKNKKLFYLAFFTFLLLVSIITVAIVVRVSTDNVPFTRSHAVVKVSCSSALYPELCFSAIAAEPGFTEKVSSHKDVIQLSLNITIRAVQNNSVSLKKLQTRADLTKRAQTALEDCLKIIDHTLYALRGSISYLNDSSYHADDLKTLVSSAITDQETCLDGFSHDDKDRNVREGLGDGHLNVERMSSNALAMIMNMTDTEDSITSGKMMEVEEEDGITWPEWISTADRRLLQASTVDADVVVAADGSGNYTTVSEAVAAAPEQSSTRYVISIKAGVYSEIVEVPSEKTNIMFVGDGATTTIITGSQNVVDGSTTYSSATVAIEGDGFLARDITFENTAGPTKHQAVALRVEGDLSAFYRCNFLGYQDTLYVRINRQFFVNCLVEGTVDFIFGNSAVVFQYCDLRARLPLSGQKNVVTAQGRVDPNQNTGIVIQNCTIRATQSLEAANGSVESYLGRPWKEYSRTVIMESYISDIINPAGWLAWNGTFALDTLFYGEYQNTGPGANTSQRVHWQGFRVITSASEALTFTPGSFISGSTWLASTGFPYALGL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0504 571 SMART PMEI_2 60 213 IPR006501 GO:0004857
Prci13g0504 571 FunFam Pectinesterase 254 571 - -
Prci13g0504 571 PANTHER PECTINESTERASE 42 561 - -
Prci13g0504 571 SUPERFAMILY Pectin lyase-like 255 570 IPR011050 -
Prci13g0504 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 218 IPR035513 -
Prci13g0504 571 Pfam Plant invertase/pectin methylesterase inhibitor 65 213 IPR006501 GO:0004857
Prci13g0504 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Prci13g0504 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 216 IPR035513 -
Prci13g0504 571 Pfam Pectinesterase 260 556 IPR000070 GO:0030599|GO:0042545
Prci13g0504 571 FunFam Pectinesterase 61 218 - -
Prci13g0504 571 CDD PMEI-like_3 68 218 - -
Prci13g0504 571 Gene3D - 254 571 IPR012334 -
Prci13g0504 571 NCBIfam pectinesterase inhibitor domain 33 217 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0504 Prci-Chr13 3814195 3816090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0504 23 571 Carbohydrate Esterase AT3G14310 58.692 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0504 K01051 - jre:109013060 692.96