Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0494 ATGGGTGACTCGTTCATGTCTAATGACAAATTGAGCGAATCTCCCGCAGTTGAAGTGACGGGAAAAATCATGGTGCTAGCTATAATAATCCTCTTCATGGTGGTTGTGTTTGTTCTGTTCCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGAAGAAACCACTCCTCCGCCGCCTCGCCGTCGCCGTCGACGCCGCTTTGTCTTCGCCCCAGGGCAAGATCCGGCTATTTACGGCGGTCAGAGCGGCGGACTCGACCCTTCAGTGCTTTTGTCCTTACCCGTATTGGTGTACCAACCTGAAAATTTCAAAGATGGTTTAGAATGTGCTGTTTGTCTCTCTGAGCTTGTCCAAGGAGAAAAGGCGAGGCTTTTACCCAAATGCAACCATGGGTTTCATGTGGATTGTATAGATATGTGGTTTCAATCACATTCTACTTGCCCACTGTGCAGAAACCCAGTTGCTTCTGAAACCCCTAAATGCAATAGCAGTTCAAGTGTTCGTGAAAATTCCGCAGAGAATATTACTAGTCAGTCACAAGCATCAGAAAATTTTCAAAATTCAGCTTTAGCTGCCGGGAGTGGTTCAGAGTCTCCAAATTTTCCAACTAATGTGTTGGTTTGGGGGAATCAGACTCAAGTTAGTTCTATCAACACTTCTTCAGAAGAAGAGAGTCCTTCATCTTCTACCACAGCTAGCAGTAGCAGTAATAATAGACGCCATGAAATGATGGTGATTGATATACCAAGTGAGGTCAATTCTTCGTCTTTATCTCCTTCTGCAAACAGGTTTGCTGAAGATGAGCTGAAATCACCAATGACCACAAGACTGAGGTCACTGAAGAGGCTTTTAAGCAGAGACAAAAGGGTGGTTGTTCTTCAAGGCCAACAAAAATGTTCCACCAGATTCTCGAACAGGACATTAAGTTAA 933 0.4469 MGDSFMSNDKLSESPAVEVTGKIMVLAIIILFMVVVFVLFLHLYAKWFWWSIEETTPPPPRRRRRRRFVFAPGQDPAIYGGQSGGLDPSVLLSLPVLVYQPENFKDGLECAVCLSELVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASETPKCNSSSSVRENSAENITSQSQASENFQNSALAAGSGSESPNFPTNVLVWGNQTQVSSINTSSEEESPSSSTTASSSSNNRRHEMMVIDIPSEVNSSSLSPSANRFAEDELKSPMTTRLRSLKRLLSRDKRVVVLQGQQKCSTRFSNRTLS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0494 310 Pfam Ring finger domain 109 152 IPR001841 -
Prci13g0494 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 269 - -
Prci13g0494 310 MobiDBLite consensus disorder prediction 216 241 - -
Prci13g0494 310 SMART ring_2 110 151 IPR001841 -
Prci13g0494 310 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Prci13g0494 310 CDD RING-H2_EL5-like 109 152 - -
Prci13g0494 310 FunFam RING-H2 finger protein ATL3 79 157 - -
Prci13g0494 310 SUPERFAMILY RING/U-box 93 159 - -
Prci13g0494 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 161 IPR013083 -
Prci13g0494 310 MobiDBLite consensus disorder prediction 157 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0494 Prci-Chr13 3794134 3796983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0494 1 289 C3H Transcription Factor Family AT1G53820 45.192 1.46e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0494 - - qsa:O6P43_027473 310.457