Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0474 ATGGAATTGCTGATGCAAGATGCTAAAATGTATTCTGATGATAAAGAGGAGGACGACGACGACGAAGAAGAAGCAGAGATAGCTAGAGAAGAAAGCAGCAACAGTAAGAGTTACCTTCCTTTATCAGCAAATTACGAAACTAGTCGCCGTCTTCACCATAATCACCATAGTCCTCATCAAAATTCGTGGTTGGGGCTCCGTGATCATCACTCTCCAGATGCTGCTCCCGCCATCGAATCTCACAATTCATCGCCTGGATTAGGGTTAACATCGGCATCCGCCGCCAATTTCGCCCGCAATCACAGGAAGCTGGACCTCATGGACTTGTCACTTGGAGGAATTGGTACCGGCAAGGACGATGAAGCACAGGAAGAAGCTAATTTTCATGGAGGAGGTAGCCGCAGTAACGGTGCTGGTGCTTCTGTTGAGAAAGAGCACATGTTCGATAAAGTCGTCACTCCCAGTGACGTAGGCAAGCTCAACCGCCTCGTAATACCAAAGCAACACGCAGAGAAGTACTTCCCTCTGGATTCCTCCTCCAACGAGAAAGGACTGCTGTTGAATTTCGAGGACCGGCACGGCAAGCCATGGCGGTTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGCTTCGTCAAGGAGAACAAGCTCGACGCCGGAGACATTGTTTCGTTCCACCGCGGCGCCAGCGAGTCTTATAGGCACCAGTTGTACATAGATTGGAGGAGAAGACCTGATCACGGACCAGGCGGCCCTGATCCCCACTTAATTACACCTTTCCTTCTTCATCCTAATCAGCCGACGACGCAGTTTTCTCAGTACTCAATTAGATGTGGCGGTCGATTATTCTCACTTCCCTCTCCGGCAGCGCCGCGACAGCTGAATCATAACAATATGTTTCTCTTATATCATCATCAACAGCAACAAGAGCGACACCACCCATGGCAGTACCAAGTCCATCATAATACGATGAATTCAAGATCTGGTTCGGCGTATTCGAACTTGATAGGGCAACAAGAAGGAAGAAATGTTCCGATGATTATAGATTCTGTTCCAGTTGATCATTACCACTCTCATCAAAGCTATTACCATGGTAAAAATAGTAATACTACTGATAATACTACTGCTGGTAAAAGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGTCTTCGTCTTCGTCTTCTTCATCATCATTAGCGGAAGAATCCAGATGCTGTAATGTGACAGTAATGGCTAATCCATCAATTTCCTCGTCTTCTATTATCCCCCCACCTCTTCATCAGTATCTGAGGGTAGCCCATGAGGATCCAATTTCTTCGTCGTCATCGTTATCATCAGCAAGGTTTCAGAGTCATCAGAAAGGGGAAACTTTGATGCTTTTCGATTTGGATCCCTCTTGGCATTACAGGCAGTGA 1449 0.4714 MELLMQDAKMYSDDKEEDDDDEEEAEIAREESSNSKSYLPLSANYETSRRLHHNHHSPHQNSWLGLRDHHSPDAAPAIESHNSSPGLGLTSASAANFARNHRKLDLMDLSLGGIGTGKDDEAQEEANFHGGGSRSNGAGASVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKENKLDAGDIVSFHRGASESYRHQLYIDWRRRPDHGPGGPDPHLITPFLLHPNQPTTQFSQYSIRCGGRLFSLPSPAAPRQLNHNNMFLLYHHQQQQERHHPWQYQVHHNTMNSRSGSAYSNLIGQQEGRNVPMIIDSVPVDHYHSHQSYYHGKNSNTTDNTTAGKRLRLFGVNMECASSSSSSSSSSSLAEESRCCNVTVMANPSISSSSIIPPPLHQYLRVAHEDPISSSSSLSSARFQSHQKGETLMLFDLDPSWHYRQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0474 482 CDD B3_DNA 146 235 IPR003340 GO:0003677
Prci13g0474 482 SUPERFAMILY DNA-binding pseudobarrel domain 145 243 IPR015300 -
Prci13g0474 482 MobiDBLite consensus disorder prediction 1 86 - -
Prci13g0474 482 ProSiteProfiles B3 DNA-binding domain profile. 148 251 IPR003340 GO:0003677
Prci13g0474 482 SMART B3_2 148 253 IPR003340 GO:0003677
Prci13g0474 482 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 55 407 IPR044800 GO:0003700
Prci13g0474 482 MobiDBLite consensus disorder prediction 13 28 - -
Prci13g0474 482 Pfam B3 DNA binding domain 148 252 IPR003340 GO:0003677
Prci13g0474 482 Gene3D - 141 256 IPR015300 -
Prci13g0474 482 FunFam B3 domain-containing protein 141 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0474 Prci-Chr13 3555112 3557333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0474 106 400 RAV Transcription Factor Family AT2G46870 48.684 2.42e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci13g0474 B3 3.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0474 K09287 - gmx:100781424 356.295