Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0466 ATGGAGAGGCCTCAAGGACCCATCAATTCCTGTCTCTTTGGTGAGCATTTGGTGCCGAACTGCTTCGAGCAAGGTCTGATTGAGAATGAAGATGAAGAAGAACTTTTGATGTCACTATCAAGTTTGGATGATAAAATGCCATTTCTTGAGATGCTTCAGAATGTGGAATCTCAAACCCCACAATTGTTTCCCTTCAAAGACTCGTACTTCCAGTTTCAGACACTTGTAAACCAGAAGAAACCATGCGCAAAAGAAGAGAGGGAAAGGGTGTCCGTACCTAGAGCAATAGAGACCCAAGTTCACGCGCCGCCGGAGCTAGAGAGCTGCGTCACCCACGAGACGGCAGAGATGCCGTCGCAGTCGTTGGAGAAATCTGAGAACTGTAGGAGAAAGAGGAAGAGACATGTTAAGAGCAGAGAAGACGTGGAGAATCAACGCATGACCCACATTACAGTCGAACGCAACCGTCGCCGCCAAATGAACGACCACCTTGGTGTTCTGAGATCGCTCATGCCTCCACCCTATATTCAAAAGGGTGACCAAGCGTCTATTATTGGAGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGTTGCTTCAATCCCTGGAGGCACAGAAAAGGATGAGAAGGAACAATGAAATTGGATTCAGCTACGGAACGACGTCGAGTGTGGAAGAATCGAACTTTGGGGAAGAGGTGCAGGCAGAGAGCAAGTCAGAGTTTGCAGAAATAGAAGTAACTGTGATTCAAAACCATGTGAACCTCAAGGTTCAGTGCAAGAGAAGAAGCGGGCAGTTAGTGAAAGCCATTGTGGGTCTTGAGGATCTTAGGCTAACTATTCTGCACCTAAACATAACCTCCTCCTCCCGGGCCTCGGTTCTCTACTGTTTCAATCTCAAGATACAAGAAGAGTGTAAGGTAGTGACAGCAAGTGAAATTGCAGGAGCAGTTGAAGAGATGTTCAGGTTCATCAATGGAAGCTAG 984 0.4675 MERPQGPINSCLFGEHLVPNCFEQGLIENEDEEELLMSLSSLDDKMPFLEMLQNVESQTPQLFPFKDSYFQFQTLVNQKKPCAKEERERVSVPRAIETQVHAPPELESCVTHETAEMPSQSLEKSENCRRKRKRHVKSREDVENQRMTHITVERNRRRQMNDHLGVLRSLMPPPYIQKGDQASIIGGAIDFVKELEQLLQSLEAQKRMRRNNEIGFSYGTTSSVEESNFGEEVQAESKSEFAEIEVTVIQNHVNLKVQCKRRSGQLVKAIVGLEDLRLTILHLNITSSSRASVLYCFNLKIQEECKVVTASEIAGAVEEMFRFINGS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0466 327 PANTHER MAX DIMERIZATION, MAD 95 324 - -
Prci13g0466 327 Coils Coil 192 212 - -
Prci13g0466 327 CDD bHLH_AtFAMA_like 147 220 - -
Prci13g0466 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 195 IPR011598 GO:0046983
Prci13g0466 327 SMART finulus 150 201 IPR011598 GO:0046983
Prci13g0466 327 MobiDBLite consensus disorder prediction 114 142 - -
Prci13g0466 327 Gene3D - 126 212 IPR036638 GO:0046983
Prci13g0466 327 Pfam Helix-loop-helix DNA-binding domain 145 196 IPR011598 GO:0046983
Prci13g0466 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0466 Prci-Chr13 3443584 3446322 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0466 37 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 43.322 9.63e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci13g0466 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0466 - - pcin:129291729 607.06