Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0465 ATGGAGAGGCCTCAAGGACCCATCAATTCCTGTCTCTTTGGTGAGCATTTGGTGCCGAACTGCTTCGAGCAAGGTCTGATTGAGAATGAAGATGAAGAAGAACTTTTGATGTCACTATCAAGTTTGGATGATAAAATGCCATTTCTTGAGATGCTTCAGAATGTGGAATCTCAAACCCCACAATTGTTTCCCTTCAAAGACTCGTACTTCCAGTTTCAGACACTTGTAAACCAGAAGAAACCATGCGCAAAAGAAGAGAGGGAAAGGGTGTCCGTACCTAGAGCAATAGAGACCCAAGTTCACGCGCCGCCGGAGCTAGAGAGCTGCGTCACCCACGAGACGGCAGAGATGCCGTCGCAGTCGTTGGAGAAATCTGAGAACTGTAGGAGAAAGAGGAAGAGACATGTTAAGAGCAGAGAAGACGTGGAGAATCAACGCATGACCCACATTACAGTCGAACGCAACCGTCGCCGCCAAATGAACGACCACCTTGGTGTTCTGAGATCGCTCATGCCTCCACCCTATATTCAAAAGGGTGACCAAGCGTCTATTATTGGAGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGTTGCTTCAATCCCTGGAGGCACAGAAAAGGATGAGAAGGAACAATGAAATTGGATTCAGCTACGGAACGACGTCGAGTGTGGAAGAATCGAACTTTGGGGAAGAGGTGCAGGCAGAGAGCAAGTCAGAGTTTGCAGAAATAGAAGTAACTGTGATTCAAAACCATGTGAACCTCAAGGTTCAGTGCAAGAGAAGAAGCGGGCAGTTAGTGAAAGCCATTGTGGGTCTTGAGGATCTTAGGCTAACTATTCTGCACCTAAACATAACCTCCTCCTCCCGGGCCTCGGTTCTCTACTGTTTCAATCTCAAGGAGCAGTTGAAGAGATGTTCAGGTTCATCAATGGAAGCTAGCAAAGGAAGTGACTGGGACTAG 963 0.4714 MERPQGPINSCLFGEHLVPNCFEQGLIENEDEEELLMSLSSLDDKMPFLEMLQNVESQTPQLFPFKDSYFQFQTLVNQKKPCAKEERERVSVPRAIETQVHAPPELESCVTHETAEMPSQSLEKSENCRRKRKRHVKSREDVENQRMTHITVERNRRRQMNDHLGVLRSLMPPPYIQKGDQASIIGGAIDFVKELEQLLQSLEAQKRMRRNNEIGFSYGTTSSVEESNFGEEVQAESKSEFAEIEVTVIQNHVNLKVQCKRRSGQLVKAIVGLEDLRLTILHLNITSSSRASVLYCFNLKEQLKRCSGSSMEASKGSDWD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0465 320 Pfam Helix-loop-helix DNA-binding domain 145 196 IPR011598 GO:0046983
Prci13g0465 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 211 IPR036638 GO:0046983
Prci13g0465 320 Coils Coil 192 212 - -
Prci13g0465 320 CDD bHLH_AtFAMA_like 147 220 - -
Prci13g0465 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 195 IPR011598 GO:0046983
Prci13g0465 320 SMART finulus 150 201 IPR011598 GO:0046983
Prci13g0465 320 MobiDBLite consensus disorder prediction 114 142 - -
Prci13g0465 320 PANTHER TRANSCRIPTION FACTOR FAMA 79 300 IPR044283 GO:0003700|GO:0010052
Prci13g0465 320 Gene3D - 126 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0465 Prci-Chr13 3443582 3446329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0465 51 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 42.553 9.34e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci13g0465 HLH 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0465 - - pcin:129291729 556.599