Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0460 ATGGGTGAAGCGGTTCTGGCTAGCTGTGAAAAGGGGTTGGAGATGAGGTTGGGGCTGGAAGAGTTGAGCAAGATGAACCAGTTGAAGGATGATAGCTCCACAGAAATGGTTAAGTGGGACAACCTTCTTCCTCAGACGGTGCTCAGTGTTCTACTTGTGGAAGCTGATGATTCTACTCGCCAGATTATAGCAGCCCTTCTCCGTAAATGTAGTTACAGAGTTGTAGCGGTTTCTGATGGATTAAAGGCATGGGAAACATTGAAGAAGAAAGCTCCTGATGTTGATCTCATATTAACTGAAGTGGAGCTGCCGTCAATATCTGGATTTGCACTTCTTACTTTAATCAAGGAGCACGAAATTTGTAGAAACATACCTATCATAATGATGTCTTCTCATGATTCTATTAGCATGGCAATGAAATGCATATTTAAAGGTGCAGCTGACTTTCTTATAAAACCTGTTCGGAGGAATGTGCTATCGACCTTGTGGCAACATGTGTGGAGAAGGCATCCTAAAAAACTTGAAGCTACTTCAGAAAACAATGTTGCCAACAATCATTCTACTGGTTCTGTGGCTTCCACACAGAAAAACAATGAATGCTGTGAGAAAAAGAGTGAGGCCCAAAGCACTTGTACATCGCCTATTTTGGAAGCTGAGAGTGCATACATACAAAATATGCAGGATGCGTCCCAGCCCAGGAGTTATTCAAATTTGAGCAACATTGACACAGTGAAGTATGAAGAGTCTTCAAAATTTGAAAGAGACTCCGCTAGGCATAATAATGGAACTACGAGGAAGTCGATTATTTATTCATCAGAGGCTGCTAGGTGCAACAGCATTACGAACTTGACAAATTTAAGGCTGGAGCCAGACAACTGTGCTGAAAAAGAGAATCAGGATGACTCTTTAAGAGCAGAGTTAAATAGAGAAAGTCCTAGTTTTGATACAGAGATTCATGGCTGCAAGAATGAATTGGTAGAACTTTCTAGGGGAACTATTGACTTGATTGCCACATTTGAGAACACTCCAAAGAATGCTGATGAGAACTATAGTCTTGCTGATGGTGGGAGAAACAAGTTTGATTTCGATCTGCAGTTGGAACTTTCCCTGCGAAATTTTTCTGGTAGTTCACGTAAACAAGAACCTGAGGAAAGGCAAACATTGCACCATTCAGATGCATCTGCCTTTTCTTGTTATAGTGGTAATAAGTTGCCACAGCCCCTTTTTCCAGCATTACCAACGAGTTCCGCCAAAGCCTATAGCACTGTGCTGAATTCCCAGAATTCTAATGAAACATCTGGATTCGATACTTCTTATCTGTATGGTGGGACAAATCATGCTCGGGAGAATACAATCCCACTGGCCCTTCACCAATCTGGACGAGTTGGAGTACAATCGCGAAATGTTCATCCTGGATCCTCTCCTGCTACTGGTGTTACTTCTGATGACATGTTCAGTGGACATGGCAATGTTATGCCTTCTATGTTCTGCACAGAATCCAGTGCTCATCCCATGTGGAGTCCCATGTCAGTCAGCCAGAAAGAGAATTCTCCCTTTCCTGAAATTACATTCGTGTCAAATGCTGATAGTCACAACTCAGAACTACATTACCATTGGTCTGATGCCACCTGTGCTTCTCTCGATAAAAAGACAGAGCGCGATAGCAGCTACTTGGATCCCACGATGCACGAATATCCAGGTGCTTATCAGAATACCAGTATTGGTTCATGCCATCAAACTCCAAGCCAGATCAATGATGGTTCGTATGGAAGTCTGGGCAGTATAAGAGATGGAGATTATACTTCAGCTGTGGTAATGGAGAAAACCCCTGAAAGCTTTAGTAACAACGGTTATCACGATTATGAAGAATGCAGAGGGGCAGATTCCCAGCGTTCTAGCCTAAGGGAAGCTGCTCTAACAAAATTTCGACTGAAGAGGAAAGACAGATGCTATGAGAAAAAGGTCAGGTATCAAAGCCGGAAAAGACTGGCAGAGAAGCGTCCTCGAATAAAAGGGCAATTTGTGCGTCAAGTTCCAAATGATTGTCCGCTTGTGGATTCTGGTGGTGGTCCCTGA 2076 0.4302 MGEAVLASCEKGLEMRLGLEELSKMNQLKDDSSTEMVKWDNLLPQTVLSVLLVEADDSTRQIIAALLRKCSYRVVAVSDGLKAWETLKKKAPDVDLILTEVELPSISGFALLTLIKEHEICRNIPIIMMSSHDSISMAMKCIFKGAADFLIKPVRRNVLSTLWQHVWRRHPKKLEATSENNVANNHSTGSVASTQKNNECCEKKSEAQSTCTSPILEAESAYIQNMQDASQPRSYSNLSNIDTVKYEESSKFERDSARHNNGTTRKSIIYSSEAARCNSITNLTNLRLEPDNCAEKENQDDSLRAELNRESPSFDTEIHGCKNELVELSRGTIDLIATFENTPKNADENYSLADGGRNKFDFDLQLELSLRNFSGSSRKQEPEERQTLHHSDASAFSCYSGNKLPQPLFPALPTSSAKAYSTVLNSQNSNETSGFDTSYLYGGTNHARENTIPLALHQSGRVGVQSRNVHPGSSPATGVTSDDMFSGHGNVMPSMFCTESSAHPMWSPMSVSQKENSPFPEITFVSNADSHNSELHYHWSDATCASLDKKTERDSSYLDPTMHEYPGAYQNTSIGSCHQTPSQINDGSYGSLGSIRDGDYTSAVVMEKTPESFSNNGYHDYEECRGADSQRSSLREAALTKFRLKRKDRCYEKKVRYQSRKRLAEKRPRIKGQFVRQVPNDCPLVDSGGGP 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0460 691 Gene3D - 49 306 - -
Prci13g0460 691 ProSiteProfiles Response regulatory domain profile. 49 167 IPR001789 GO:0000160
Prci13g0460 691 Pfam CCT motif 635 677 IPR010402 GO:0005515
Prci13g0460 691 SUPERFAMILY CheY-like 49 176 IPR011006 -
Prci13g0460 691 SMART REC_2 48 163 IPR001789 GO:0000160
Prci13g0460 691 ProSiteProfiles CCT domain profile. 635 677 IPR010402 GO:0005515
Prci13g0460 691 CDD psREC_PRR 50 153 - -
Prci13g0460 691 MobiDBLite consensus disorder prediction 177 197 - -
Prci13g0460 691 Pfam Response regulator receiver domain 50 160 IPR001789 GO:0000160
Prci13g0460 691 MobiDBLite consensus disorder prediction 291 311 - -
Prci13g0460 691 PANTHER TWO-COMPONENT RESPONSE REGULATOR 49 326 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0460 Prci-Chr13 3415282 3420263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0460 630 678 Response Regulator Gene Family AT5G24470 85.714 8.18e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Prci13g0460 Response_reg 9.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0460 K12130 - gmx:100779346 694.886