Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0453 ATGTCTCGTCCAAGACAATTCCAGATGGTGGGTGGTGCTAACAATCCTGGGCATTACAATGACACGACTTTTACTAAAATCTTTGTGGGTGGATTGGCTTGGGAGACTGAAAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGTGAGATCCTTGAGGCTGTTGTTATCACAGACAAGAACACAGGGCGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAAGCAGCCATGAGAGCATGTCAGAATCCGTCTCCAGTTATTGATGGGAGAAGAGCAAACTGCAATCTTGCATCTCTTGGAGCAAACAAGAATCGCCCACCAACTCCTCAACATGGAAGGTTCAGACCAGGACCTGGACTGGTGGCTACACCTGCATACCAAGGCTCTTCCTCTACATTTTTCCATCAACCCTCTGGCCAATATACATTTCCTTATTCAGCTTATGGGTATTCTGGATATTCACAAGACACCATGTATCCCATGAACTATTATAGTGTGTATGGAGGTCAACAGTTTTCACCATACTACCCATCTAGTGGGGCATCTGGGCCACCAGGACTGGTCCATAATATTTATCCTTTCTATGCTCAATATGCACAGAGTAGCCAAGCTCAGGGTTTTGGACTTCAATATCCCCAAATGCTACAGTTTCCATTTCTGCATCAACACTATGGCTCCACTGGGATCCTCTCTTTTTCTTCTTCAGTGCCGATGTCAACCACTACAACTAGTGCAGTTGCAACAGCAGCAGCGGCAGCAGCAGCAGCAACAGGGACAACATCAACAGCAGTAGCGGCAACAACTGGGGCAGGTGCTTCACAAGCTTCTGGAACAGCTTCTGAACAAAAATCTTTAAATTAG 870 0.4586 MSRPRQFQMVGGANNPGHYNDTTFTKIFVGGLAWETERDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGRFRPGPGLVATPAYQGSSSTFFHQPSGQYTFPYSAYGYSGYSQDTMYPMNYYSVYGGQQFSPYYPSSGASGPPGLVHNIYPFYAQYAQSSQAQGFGLQYPQMLQFPFLHQHYGSTGILSFSSSVPMSTTTTSAVATAAAAAAAATGTTSTAVAATTGAGASQASGTASEQKSLN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0453 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 102 IPR000504 GO:0003723
Prci13g0453 289 SUPERFAMILY RNA-binding domain, RBD 19 120 IPR035979 GO:0003676
Prci13g0453 289 CDD RRM_RBM24_RBM38_like 25 100 - -
Prci13g0453 289 Gene3D - 4 116 IPR012677 -
Prci13g0453 289 FunFam RNA-binding protein 24-B isoform X1 12 118 - -
Prci13g0453 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 84 IPR000504 GO:0003723
Prci13g0453 289 SMART rrm1_1 26 98 IPR000504 GO:0003723
Prci13g0453 289 MobiDBLite consensus disorder prediction 269 289 - -
Prci13g0453 289 PANTHER BOULE-RELATED 17 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0453 Prci-Chr13 3350285 3353737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0453 21 101 C2H2 Transcription Factor Family AT2G19380 44.444 4.63e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0453 - - qsu:111994039 421.779