Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0451 ATGCAGGAGAACATGAGCATCTCTGTGAATGGACAGTCCCAGGTACCTCCTGGCTTCCGTTTCCATCCCACTGAAGAGGAGCTATTGCAGTACTACCTCAGGAAGAAGGTCTGCTACGAGCAGATCGACCTCGACGTCATTCGCGACGTCGATCTCAACAAGCTCGAACCCTGGGATATACAAGAGAAGTGCAAAATAGGAACCACCCCACAGAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCCACCGGAACTCGAACGAACCGGGCCACCGCTGCCGGATTCTGGAAGGCGACCGGGCGGGACAAGGTGATATACGGCAACGGGAAGAGGATCGGGATGAGGAAGACCCTTGTTTTCTACAAAGGACGTGCCCCTCACGGCCAAAAGTCTGATTGGATCATGCATGAGTATAGGCTCGAAGATAACAACACCAGCACCGAGACCAGCATTGTCACGAATGTAATGGGAGATGGAGGACAGGAAGAGGGGTGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTCAAAACCCTAGAGAGCCCCCTGGCTTCGTCCATTGCAGAGGAAACCATGAGAAGCCACAACCACGACTCCATTTTCGATGCTTGTGACGACGACGAGGGAGCTTTGGAACAAATACTCGAGCAAATGGGAAGAAACTGTTGCAAGGAAGAAGAACATAACGACCCCACTACCAACAGAAGAATCACCAAACGGTTTGACGACACTGTCATCACCACCACCAACAACAACAATGGCTACTTCCACCATGACAGGTTCTCGAAGCTTCCTCGCTTAGAAAGCCCAACATCTACCAACAACAACACCGGGTACCACCCTATTATGGAAGCGGCTTATGGTGGCGGCGACCGCAGCTTTGTTCATCATCAAACAGAATCGGCAGCTTCGTCAGTTAATGCCGGCCTTATCACCAACTGGGCAGCACTGGATCGGCTTGTAGCTTCGCAGCTTAATGGCCAAACAGAGACTTCCCGGAGCCTGCCTTGCTTCAATACCGCCGGAGACCCCATCTCGGGCTACGATCGGCAACTTCCGACCCTACGACCTTCCTCACTTTCGTCAATAATATCATCATCATCAGCCCTCAACAGTGGAGCTAATTACGATTACACCAGCGAGATTGACCTCTGGGACTTTGCCCGATCCGCATCATCGTTAGTGTCAGGCTCCGAACCACTATGCCACGTGTCCAACACATCATCAGTGTAG 1245 0.5157 MQENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVCYEQIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYGNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEDNNTSTETSIVTNVMGDGGQEEGWVVCRIFKKKNHLKTLESPLASSIAEETMRSHNHDSIFDACDDDEGALEQILEQMGRNCCKEEEHNDPTTNRRITKRFDDTVITTTNNNNGYFHHDRFSKLPRLESPTSTNNNTGYHPIMEAAYGGGDRSFVHHQTESAASSVNAGLITNWAALDRLVASQLNGQTETSRSLPCFNTAGDPISGYDRQLPTLRPSSLSSIISSSSALNSGANYDYTSEIDLWDFARSASSLVSGSEPLCHVSNTSSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0451 414 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Prci13g0451 414 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Prci13g0451 414 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Prci13g0451 414 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Prci13g0451 414 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 253 - -
Prci13g0451 414 FunFam NAC domain-containing protein 24 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0451 Prci-Chr13 3295094 3296898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0451 1 412 NAC Transcription Factor Family AT2G46770 54.785 1.16e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci13g0451 NAM 6.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0451 - - pcin:129288653 522.702