Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0438 ATGCAAAACTTGGAATCGAGTCCTGACCCCACAGTAGGGAGTAGGCCCCACCATATTTCACCATATAACCCCCGCACCCCGATCCCCTGGCAGGCATCAATCCAAACCCTTCCACGCTCGGTTTATTCACGCAACAAGGAGTCAAGGAGTCAAGGACTATTTCTCCCAGTTCCCATGGATGATTTGACCATCCCTCCTTCCTCCACCTCTTCTCTTCTATGTCTCCCCCGTGATTCCCAACCCTCCCTCCAGCAAAAGCTCCAATTTCTTCTCAACAGTCAGCCTCACTGGTGGCTCTACGCCATTTTCTGGCGGATTTCCAACGACGACGTCAATGGCACTCTCCTCCTCTCCTGGGGTGATGGCCATTTCAATGGCACCAAGGACACCTCTCCTCGACTCTCCAGTTCCACCACCGCCGCCACCTCCTCCGCCACTCCCCATTACACCGACCTCCATTCCGACAGAACACGCTTCGTGAACAGCATTCACTCTCTCATCAACGACAACACCGCCAACATATGCAGCGATCTCCATGATACCGAGTGGTTCTACGTCATGTCCCTGACTCGTACCTTCTCCATTGCCTCCCCTGCTTCTCTCCCTGGTAAGGCCTTCACTTCTGGCTCTCCGCTCTGGCTCAACAGCGATCACGACCTCCAATTTTGCAACTGCGAGAGGGCCAAGGAGGCTTACTTGCACGGAATTGAGACTCTGATCTGCATCCCCACCAATAACGGAGTTATCGAAATGGGTTCCTCTGATTTCATACCCGAAAACTGGGCTCTCGCTCAGCAGGCCAAAGCTCTGTTCGGGTCTGACCTCATCTCCAAGCAACCCAACAACAACCTGATTCAGTTCTTCGACGATCAGAACATTTCCTTTGCCGATATCGGCATTATCGCCGGCGTGCAGGAGGAAGACGACAATTCCCACGTGCCCGACAACAATAACAGCGCGAGGAATGATAATAGCAAGAAGAAGCGGGAACAGAGGAACAAGGCGAATTCGGGATTCAAGTTCGGGTATGCAGATTCGGAGCATTCCGATTCGGACTGCAATCCTTCGATAGAGAAAAGAACCCCGAAAAAGAGAGGGAGAAAACCCGGCCTGGGCCGCGAAACGCCGCTGAACCACGTGGAGGCAGAGCGACAGCGACGGGAGAAGCTGAATCACCGGTTCTACGCCCTGCGCGCAGTGGTTCCGAACGTCTCGAGAATGGACAAGGCTTCTCTGTTATCGGACGCCGTGGACTACATCAACGAGCTGAAATCGAAGATCGAGGACCTGGAATCGCAGGTTCAGAAAGAAACGAACAATAACAGCAAGAAAGTGAAAACGGAATTGGCGGACACTAGCACGACAGACAACCAGAGCGCGACGACATCGACGGTGGAGCAAACAATGACGACGTCATCGGGAGGGCCTGGCGGGACAGGGATGGAGGTGGAGGTGAGGATCATGGGGCCGGAGGCAATGGTGAGGGTCCAATCGGAGAAGGCAAACCACCCAGGGGCGAGGCTAATGGCGGCGTTGAGAGACCTGGAGCTAGGGGTTCACCATGCGAGCATGTCGTGTGTGAACGAGCTCATGCTGCAGGACGTGGTGGTGAAGATTCCTGAAGATTTGAGGAACAACGAGGCTCTCAAATCCGCCATTCTGGGGCGTTTGGCTCCCTAG 1680 0.5435 MQNLESSPDPTVGSRPHHISPYNPRTPIPWQASIQTLPRSVYSRNKESRSQGLFLPVPMDDLTIPPSSTSSLLCLPRDSQPSLQQKLQFLLNSQPHWWLYAIFWRISNDDVNGTLLLSWGDGHFNGTKDTSPRLSSSTTAATSSATPHYTDLHSDRTRFVNSIHSLINDNTANICSDLHDTEWFYVMSLTRTFSIASPASLPGKAFTSGSPLWLNSDHDLQFCNCERAKEAYLHGIETLICIPTNNGVIEMGSSDFIPENWALAQQAKALFGSDLISKQPNNNLIQFFDDQNISFADIGIIAGVQEEDDNSHVPDNNNSARNDNSKKKREQRNKANSGFKFGYADSEHSDSDCNPSIEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKSKIEDLESQVQKETNNNSKKVKTELADTSTTDNQSATTSTVEQTMTTSSGGPGGTGMEVEVRIMGPEAMVRVQSEKANHPGARLMAALRDLELGVHHASMSCVNELMLQDVVVKIPEDLRNNEALKSAILGRLAP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0438 559 MobiDBLite consensus disorder prediction 368 385 - -
Prci13g0438 559 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 435 IPR036638 GO:0046983
Prci13g0438 559 MobiDBLite consensus disorder prediction 345 360 - -
Prci13g0438 559 MobiDBLite consensus disorder prediction 434 477 - -
Prci13g0438 559 MobiDBLite consensus disorder prediction 1 27 - -
Prci13g0438 559 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 423 IPR011598 GO:0046983
Prci13g0438 559 MobiDBLite consensus disorder prediction 306 385 - -
Prci13g0438 559 Coils Coil 413 447 - -
Prci13g0438 559 CDD bHLH_AtAIB_like 372 436 - -
Prci13g0438 559 PANTHER MYC 71 556 IPR045084 GO:0003700|GO:0006355
Prci13g0438 559 MobiDBLite consensus disorder prediction 321 335 - -
Prci13g0438 559 Pfam Helix-loop-helix DNA-binding domain 378 423 IPR011598 GO:0046983
Prci13g0438 559 SMART finulus 380 429 IPR011598 GO:0046983
Prci13g0438 559 MobiDBLite consensus disorder prediction 128 149 - -
Prci13g0438 559 Gene3D - 372 441 IPR036638 GO:0046983
Prci13g0438 559 MobiDBLite consensus disorder prediction 434 480 - -
Prci13g0438 559 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 83 271 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0438 Prci-Chr13 3115890 3117703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0438 80 558 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 34.173 2.33e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci13g0438 bHLH-MYC_N 2.1e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0438 - K13422 pcin:129291555 1073.15