Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0427 ATGTCAGCCCATTGCGAATTCTCGCATTCTGTAGCACCAGAAACATTCAGCACCACACCAACTTATTCTTCTTCTTCATCATCAACAGGAACATCGAACTCCGGGAACAAGAAGAATAGCGATTGCAAGAGAAGGTTCAGTAAGGATCAAATAAAGTTACTGGAGTCCATGTTCGAGACTGAGTCCAGGCTTGACCCCTCAAAGAAGTCGCAGCTAGCTTCAGAACTTGGCTTGCAGCCTCGCCAGGTGGCCATTTGGTTCCAGAACAGACGAGCTCGATCCAAGTCCAAGCACCTTCAACGTTCTTACTCTCTTCTCCGAGCCAATTACGACGTTTTGGCTTCCAAATTCGAGGCTCTTGAGAATGAGAATCATGCATTACAACTAGAGTTGCAGAAGCTCAAGGATTTGGAAGACCAAACCTTTCGTCGCAAGAAAGTGAAAGATGTGAAAATGATAGATAGAGAGTGTGATAATGGTAATGAAGAGGCCATCAAGTGTGAAGCGGAGGTGAGGCCGAGTCCATCAATAGAAAGATCAGGACAGACACTTGGGATTCTTTCAGATAATGATCGGAGCATAAAGACAGGCTATTTTGGGGTTGAAGATAAACCTACGCTTCTGAACTTTGGTGATAAGCGTACTGATTGTCCCAGGACATCACAAGAAGTTTGGAGAAATTTTGAATCTGCGGATGACCTCTTGGCCCAGTCTGACACTGGTTATCAATGGTGGGACTTGTGGTCCTGA 750 0.4533 MSAHCEFSHSVAPETFSTTPTYSSSSSSTGTSNSGNKKNSDCKRRFSKDQIKLLESMFETESRLDPSKKSQLASELGLQPRQVAIWFQNRRARSKSKHLQRSYSLLRANYDVLASKFEALENENHALQLELQKLKDLEDQTFRRKKVKDVKMIDRECDNGNEEAIKCEAEVRPSPSIERSGQTLGILSDNDRSIKTGYFGVEDKPTLLNFGDKRTDCPRTSQEVWRNFESADDLLAQSDTGYQWWDLWS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0427 249 Pfam Homeodomain 44 95 IPR001356 GO:0003677
Prci13g0427 249 CDD homeodomain 43 98 IPR001356 GO:0003677
Prci13g0427 249 Gene3D - 22 101 - -
Prci13g0427 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 161 IPR045224 GO:0003700
Prci13g0427 249 Pfam Homeobox associated leucine zipper 97 137 IPR003106 GO:0006355|GO:0043565
Prci13g0427 249 MobiDBLite consensus disorder prediction 1 44 - -
Prci13g0427 249 SUPERFAMILY Homeodomain-like 17 97 IPR009057 -
Prci13g0427 249 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Prci13g0427 249 Coils Coil 103 140 - -
Prci13g0427 249 MobiDBLite consensus disorder prediction 11 37 - -
Prci13g0427 249 SMART HOX_1 37 101 IPR001356 GO:0003677
Prci13g0427 249 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Prci13g0427 249 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Prci13g0427 249 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0427 Prci-Chr13 2974133 2975459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0427 12 249 Homeobox Transcription Factor Family AT2G46680 40.078 3.56e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci13g0427 Homeodomain 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0427 K09338 - pvy:116109008 223.402