Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0414 ATGATGGTAGTAGATGTATTGTCTTCTGCCACTTCTGGTCCTACTTCGGAAGTCATTTCTCAACTTGTAGATTCTATTCTTGAGCTTGTATACTATGCTAGTGATGTCCTTGTGAAGAAGGATAGTTTTAAGGAACTTGCAGCGTACTTGGAAAGAATTGTACCCATCCTAAAAGAATTGAGGAATAAAAAAGTCAGTGATATTGAGACATTTAACCACACCATTGACATTTTGAATCGTGAAATTAGAGAGGCAAATAAACTGACTCAAGAATGCAGCAAGAGGAACAAGGTATATCTCTTATTGAACTGCAGGTCTATTGTAAAGCGTTTAAAGAACAGTACAAGTGAGATCGGCCGTGCTCTTGCATTTATTCCGCTTGCTACCCAAGATCTTTCTTCTGGAATAATTGAAGAAATCGAAAATCTCTGTGACAACATGCAGAAAGCTGAGTTTAAGGCAGCCATAGCGGAAGAGGAGATTTTGGAGAAAATCGAATCAGGGATACATGAAAAGAATATTGACCGATCTTATGCCAATAACTTGTTGATTCTCATTGCACAAGCTGTTGGCATAACAAATGAGAAGTCAACCATGAAGAAGGAACTGGAAGAATTCAAGAGTGAAGTTGAAAATGCCCGTCTAAGAAAGGACCTGGCTGAAGCTATACAAATGGATCAGATCATCGCTTTGCTTGAAAGGGCTGATGCAGCCTCATCACCAAGGGAAAAAGAATTGAAATACTTTGCCAAACGCAAATCTCTAGGAAGTCAACCTTTAGATCCTCTTCAATCATTTTATTGCCCTATAACTCGAGATGTTATGGTGGACCCTGTTGAAACTTCTTCAGGGCAGACATTTGAGAGAAGTGCCATAGTAAAGTGGTTTGCAGAAGGAAATAATATGTGTCCTCTGACAATGACTCCTTTAGATACATCAGTTTTACGACCTAATAAAACCCTGAAACAATCAATAGAAGAATGGAAGGATCGAAATACCATGATTAAGATTGCTTCAATGAAAGAAAAAATTGAGTCAGGAGATGATGAAGAAGTACTGCATTGCCTGGGATCTCTGAAGGATTTGTGTGAAGAAAAAGATCAGCACAGAGAATGGATGATATTGGAGAATTACATACCAGTTCTTATCCAGGTTCTTGGTTCCAAGAACCGTGATGTAAGGAATGAAGCTCTTGTCATCCTTTGCATGTTGGCTAAGGATAGTGATGATGCCAAGGAAAGACTTGAAAATGTTGATAATGCAATTGAATCGATTGTCCGTTTTCTTGGACGTCGTGTGGCAGAAAGGAAGTTGGCAGCAGCATTATTATTGGAGTTATCCAAGAATGATAGGTTACGAGAACACATTGGAAAAGTCCAAGGTTGCATACTACTATTAGTGACTATATCTAGCAGTGATGACAGCCAAGCTGCCAGGGATGCTGCAGAACTACTGGAGAAACTTTCATACTCTGATCAGAATGTCTTGCAGATGGCAAAGGCAAATTATTTCAGGCATCTGTTGCAGCGCCTTTCCTCAGGACCAGATGATGTAAAATTGCTTATGGCAACAACTCTAGCAGAAATGGAGTTAACCGATCACAATAAAGAGTCTTTATTTTCAGGTGGTGTGCTGGATCCTCTGCTTCACTTGGTCTCGCACGGTGATCCTCATGTGAAAACCATGGCTGTTAGAGCTCTTCGGAACCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAGGGAGCCGTGCGCCCATTATTTGGGCTTCTTTTCCATCGAAGCTTACCACCATCAAGTTTGTGGGAACATGTAGCTGCCATAATCATGCAACTTGCTGAATCAACCATTGCTCAAGATAGCCAGGCGCCAGTTTTGTTATTTGAATCTGATGACGATGTTTTTAACCTCTTCGCCTTAATTAGATTCTCAGGGCCTGAGGTGAAGCGAAAGATTATCCAGACCTTTTATGCCTTGTGTCAATCCACATCAGCTCCATACATCAAGACCAAGCTGATAGAGTGCTCTGCTGTTCAAGAACTGGTTCCATTTTGTGAGAATGAAAACCTTGATCTACGAGCAAGTGCTGTGAAGTTGTTGTCATGCTTGATTGCAAGCTGCGATGAGGCAAGCATTCTGGAGAATGTAAACCAGAGGAGTTGTGAGAATTTAGTGCGGATCCTTAGATCTTCTTCAGATGAAGAAGAACTTGCTTCTGTTATGGCCATAATATGCCTTCTTCCAGAAATTCCTCAGATCTCTCAATGGCTTCTAGATGACGGTGTACTGCCCATCATTTATAAGTATATCCAAGAAGGGAAAGATAGGGATCTCCAAAAGAATAACTTAGTAGAGAATTCTGTGGGTGCCCTATGTCGTTTCACAGTTCCAGCAAACTTGGAGTGGCAAAAAAGTGCAGCGGAAACTGGGATTATACCTATTTTAATACAGTTGCTCGAATGTGGAACCAGATTGGCGAAACAGCGTGCGGCGTTGTCTCTTAGCCAATTTTCAAAGAGTTCTGTTAGGCTGAGCAAGCCAGTTTCCAAGCACAAGGGACTCTGGTGCTTCTCAGCTCCTGCAGGAATGAGCTGCTTGGTTCATGGAGGAATCTGTTCTGTCAAGTCATCATTTTGCCTTGTAGAAGCTGATGCTGTGGGACCTCTGACAAGGACTCTGTGGGATTCTGATCCCAGAGTTTGTGAGGCTTCTTTGGATGCACTCCTGACTTTGATTGAAGGTGAGAGACTGCAGAGTGGTAGTAAAGTGCTTGAAACAGCAAATGCCATACCAGCAATTATAAAGTTTCTCGGTTCCTCATCTGCTGAATTGCAGGAAAAATCTCTCAATGCTTTGGAGAGGATTTTTCGGTTAATTGAGTACAAACAGAAGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGCGTGGTAATAGTAGTATGAGATCAATGGCGGCTAGAATATTGGCACATTTAAATGTGCTTCATGACCAGTCTTCTTATTTCTGA 3024 0.4144 MMVVDVLSSATSGPTSEVISQLVDSILELVYYASDVLVKKDSFKELAAYLERIVPILKELRNKKVSDIETFNHTIDILNREIREANKLTQECSKRNKVYLLLNCRSIVKRLKNSTSEIGRALAFIPLATQDLSSGIIEEIENLCDNMQKAEFKAAIAEEEILEKIESGIHEKNIDRSYANNLLILIAQAVGITNEKSTMKKELEEFKSEVENARLRKDLAEAIQMDQIIALLERADAASSPREKELKYFAKRKSLGSQPLDPLQSFYCPITRDVMVDPVETSSGQTFERSAIVKWFAEGNNMCPLTMTPLDTSVLRPNKTLKQSIEEWKDRNTMIKIASMKEKIESGDDEEVLHCLGSLKDLCEEKDQHREWMILENYIPVLIQVLGSKNRDVRNEALVILCMLAKDSDDAKERLENVDNAIESIVRFLGRRVAERKLAAALLLELSKNDRLREHIGKVQGCILLLVTISSSDDSQAARDAAELLEKLSYSDQNVLQMAKANYFRHLLQRLSSGPDDVKLLMATTLAEMELTDHNKESLFSGGVLDPLLHLVSHGDPHVKTMAVRALRNLSSLKKNGLEMIRQGAVRPLFGLLFHRSLPPSSLWEHVAAIIMQLAESTIAQDSQAPVLLFESDDDVFNLFALIRFSGPEVKRKIIQTFYALCQSTSAPYIKTKLIECSAVQELVPFCENENLDLRASAVKLLSCLIASCDEASILENVNQRSCENLVRILRSSSDEEELASVMAIICLLPEIPQISQWLLDDGVLPIIYKYIQEGKDRDLQKNNLVENSVGALCRFTVPANLEWQKSAAETGIIPILIQLLECGTRLAKQRAALSLSQFSKSSVRLSKPVSKHKGLWCFSAPAGMSCLVHGGICSVKSSFCLVEADAVGPLTRTLWDSDPRVCEASLDALLTLIEGERLQSGSKVLETANAIPAIIKFLGSSSAELQEKSLNALERIFRLIEYKQKYGASAQMPLVDLTQRGNSSMRSMAARILAHLNVLHDQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0414 1007 SUPERFAMILY RING/U-box 253 334 - -
Prci13g0414 1007 SUPERFAMILY ARM repeat 329 997 IPR016024 -
Prci13g0414 1007 Coils Coil 68 95 - -
Prci13g0414 1007 Gene3D - 341 432 IPR011989 -
Prci13g0414 1007 Coils Coil 189 223 - -
Prci13g0414 1007 Gene3D - 634 856 IPR011989 -
Prci13g0414 1007 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Prci13g0414 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 340 IPR013083 -
Prci13g0414 1007 Gene3D - 15 130 IPR036537 GO:0007166
Prci13g0414 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1007 - -
Prci13g0414 1007 Coils Coil 140 160 - -
Prci13g0414 1007 CDD RING-Ubox_PUB 266 315 IPR045210 -
Prci13g0414 1007 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Prci13g0414 1007 Gene3D - 433 629 IPR011989 -
Prci13g0414 1007 Pfam Armadillo/beta-catenin-like repeat 533 572 IPR000225 GO:0005515
Prci13g0414 1007 SMART arm_5 667 707 IPR000225 GO:0005515
Prci13g0414 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Prci13g0414 1007 SMART arm_5 366 406 IPR000225 GO:0005515
Prci13g0414 1007 SMART arm_5 532 572 IPR000225 GO:0005515
Prci13g0414 1007 SMART arm_5 408 448 IPR000225 GO:0005515
Prci13g0414 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Prci13g0414 1007 CDD MLKL_NTD 19 130 - -
Prci13g0414 1007 Gene3D - 864 1005 IPR011989 -
Prci13g0414 1007 Pfam U-box domain 266 332 IPR003613 GO:0004842|GO:0016567
Prci13g0414 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0414 Prci-Chr13 2846257 2860362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0414 264 1007 U-box Gene Family AT1G76390 28.980 3.59e-65 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0414 - - qsa:O6P43_027410 1398.26