Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0411 ATGACAATCCCAGATCTGAATTTTGGATTTAAATCTTTTATTGCAATCATGATTTTGTTGCTCATTGAACGCCTCTACCGCTTCATGTGCATCAGCCCTCGCATATATGCAGGTTTTGCGTTTGTGTATTATGAGGATGAGCGTGATGCAGAAGATGCCATTCGAGCATTAGACAATTTTCCATTTGGTTATGACAAGAGAAGGCTGTCTGTGGAGTGGGCTAGAGGTGAACGTGGTCGTCATCGAGATGGGTCTAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATTAACTTTGACCCAATTCGCACTAGAGTTCGTGATATAGAAAGACACTTTGAACCATATGGAAAAGTTCTTCATGTTCGGATTCGTCGGAATTTTGCTTTTGTGCAATTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGCGACAGATATTATGACAGCCCCAGACGAGGGGGCTATGGAAGATCACCCAGTCCAGTTACTCGTAGGCGACCAAGTCCTGATTATGGTCGTCCGCATAGCCCTGTGTATGATAGGTACAATGGACCAGCATATGACAGACGTCGGAGTCCTGATTATGGTAGGCCAAGGAGTCCTGAATATGGTAGGCCAAGGAGTCCTGAATATGGTAAATACCGCAGCCGTTCACCAATCCGAAGGTCCAGGACTTGA 759 0.4493 MTIPDLNFGFKSFIAIMILLLIERLYRFMCISPRIYAGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGYGRSPSPVTRRRPSPDYGRPHSPVYDRYNGPAYDRRRSPDYGRPRSPEYGRPRSPEYGKYRSRSPIRRSRT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0411 252 Gene3D - 32 86 IPR012677 -
Prci13g0411 252 MobiDBLite consensus disorder prediction 168 252 - -
Prci13g0411 252 SUPERFAMILY RNA-binding domain, RBD 37 87 IPR035979 GO:0003676
Prci13g0411 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 76 IPR000504 GO:0003723
Prci13g0411 252 SUPERFAMILY RNA-binding domain, RBD 84 185 IPR035979 GO:0003676
Prci13g0411 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 164 IPR000504 GO:0003723
Prci13g0411 252 MobiDBLite consensus disorder prediction 211 244 - -
Prci13g0411 252 CDD RRM2_AtRSp31_like 94 163 - -
Prci13g0411 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 34 108 - -
Prci13g0411 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 157 IPR000504 GO:0003723
Prci13g0411 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 62 IPR000504 GO:0003723
Prci13g0411 252 FunFam Serine/arginine-rich splicing factor RS31 85 175 - -
Prci13g0411 252 Gene3D - 87 175 IPR012677 -
Prci13g0411 252 SMART rrm1_1 94 160 IPR000504 GO:0003723
Prci13g0411 252 SMART rrm1_1 15 72 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0411 Prci-Chr13 2828124 2831766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0411 38 169 Eukaryotic Initiation Factors Gene Family AT1G49760 25.342 2.21e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0411 K12893 - gmx:100797709 369.392