Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0410 ATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCAGAGCTGGAACGCCTGTTCGCTAAGTATGGGAGGATAGAACGCGTTGACATGAAATCGGGTTTTGCGTTTGTGTATTATGAGGATGAGCGTGATGCAGAAGATGCCATTCGAGCATTAGACAATTTTCCATTTGGTTATGACAAGAGAAGGCTGTCTGTGGAGTGGGCTAGAGGTGAACGTGGTCGTCATCGAGATGGGTCTAGAGCAAACCAGAGGCCCACAAAAACATTATTTGTGATTAACTTTGACCCAATTCGCACTAGAGTTCGTGATATAGAAAGACACTTTGAACCATATGGAAAAGTTCTTCATGTTCGGATTCGTCGGAATTTTGCTTTTGTGCAATTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATACTGGATAGGGTGGTTTCAGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGCGACAGATATTATGACAGCCCCAGACGAGGGGGCTATGGAAGATCACCCAGTCCAGTTACTCGTAGGCGACCAAGTCCTGATTATGGTCGTCCGCATAGCCCTGTGTATGATAGGTACAATGGACCAGCATATGACAGACGTCGGAGTCCTGATTATGGTAGGCCAAGGAGTCCTGAATATGGTAGGCCAAGGAGTCCTGAATATGGTAAATACCGCAGCCGTTCACCAATCCGAAGGTCCAGGACTTGA 753 0.4648 MRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRRGGYGRSPSPVTRRRPSPDYGRPHSPVYDRYNGPAYDRRRSPDYGRPRSPEYGRPRSPEYGKYRSRSPIRRSRT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0410 250 SMART rrm1_1 92 158 IPR000504 GO:0003723
Prci13g0410 250 SMART rrm1_1 3 70 IPR000504 GO:0003723
Prci13g0410 250 Gene3D - 85 173 IPR012677 -
Prci13g0410 250 Gene3D - 1 84 IPR012677 -
Prci13g0410 250 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Prci13g0410 250 MobiDBLite consensus disorder prediction 209 242 - -
Prci13g0410 250 CDD RRM2_AtRSp31_like 92 161 - -
Prci13g0410 250 SUPERFAMILY RNA-binding domain, RBD 82 183 IPR035979 GO:0003676
Prci13g0410 250 MobiDBLite consensus disorder prediction 166 250 - -
Prci13g0410 250 SUPERFAMILY RNA-binding domain, RBD 4 84 IPR035979 GO:0003676
Prci13g0410 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Prci13g0410 250 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Prci13g0410 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Prci13g0410 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 238 - -
Prci13g0410 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Prci13g0410 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0410 Prci-Chr13 2828124 2831884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0410 4 167 Eukaryotic Initiation Factors Gene Family AT4G34110 27.979 1.11e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0410 K12893 - gmx:100797709 431.795