Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0385 ATGGAACAATTGCAAGCATCAACGAATCAGGAATTGAACCAACAGATTCCCCATTTCAATATTTCATCTAAGATTCTATGCCGTGTTATGCACATTCAGCTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGCATTACTTTGCTTCCAGAATCAGATCAAACTGAGCCTACGAGCTCCGATCCATGTCCACCTGAGACTCGGACTCAGGCTTTTCATTCATTTTGCAAAATACTAACGGCATCAGATACTAGCACGCATGGAGGGTTTTCAGTTCTGCGGAAGCATGCTAATGAGTGCTTGCCTCAATTGGACATGACCCAAGCAACCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATATTCCGAGGTCAACCAAGGAGGCACTTGCTTACGACTGGCTGGAGTACATTTGTCACTTCCAAAAGACTGGTAGCTGGAGATGCATTTGTGTTCCTGAGGGGGGAGAACGGGGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCGGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTGCCACTCGTACCATGTTTGTAGTTTACTACAAACCAAGGACCAGACAATATATAATTGGTTTAAACAAGTTTCTGGAGGCGATCAACAATAAATTCGCGGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGATGATTCGCCTGAGAGAAGGTTTTCAGGAACTATTGTTGGTGTTGGCGATTTATCTCCAGAGTGGCCAGACTCAAAGTGGAGGTCATTGAAGGTCCAATGGGATGAACCTGCAACAATCTCAAGGCCAGAGAGAGTTTCTCCCTGGGAGATAGAACCTTTTGTGGCTTCTGCACCTGTAAATCTCGTTCAACCGCCAGTGAAGAGCAAAAGACCTCGACCTGTTGATGTACCATCTTCCGAAATGGTTTCCAATTCAGCTGCTTCAGCTTTCTGGTATCACGGATCATCCCAGTCCCATGAACCTGCTCAATTAGGTGGCGCAACAGAAGCCCATAGCAATGAGATCCAGGTTTTATGGAACGCAATGAACAACACTAGTTCCTGTAACTCTAGATTCCGTGTTGAAGGAGCGTGGCCTCCATCACATTTGAACATCTCTTCAAACTGTCTTCCTGACCCGAAAAACAACAAATCTGTTACAGCTCATCCATCTGTCCCTGGTTATCCTCCTGTCTCTTCTTGGCCAAATGATGCTCCAGCATATGATCAAATTGAGAATGGGAAGAAATCTGAGAACGCTGTGGGGTGCCGGCTATTTGGAGTGAATTTGACTAACAACTCTAATAATGTTGCTCCTCTAGAGAAAGAGTCAAGAGGCTGTACTGCTAGCCCTAGTGGTTCCAAAGAATCTATTCCATGTGAAGCTAAGTCAAATCAGAATCCCAATTGTTCAGTGTACCAAAAGGAGCAGAAGCAAGAAGCATCTAATGCATCACCAAATGAGAGACAGAGCAGGCAGGCATCTTTACCAGCCACGAGGACTCGGACAAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCTGTTGACTTGACTATGTTGAATGGCTATGACAATCTGATTGAAGAGCTGGAAAAGTTGTTCGACATTAAAGGAGAGCTTCGTACACAGAACAAATGGGCTGTTACTTTTAGAGATGATGAGAATGACAGGATGCTTGTGGGCGATGATCCATGGCCTGAGTTTTGCAAAATGGTGAAGAGGATCATAATATATTCAAGCGAGGAAGTGAAGAAGATGAATGCAACGTGCCCGGTTCCTCCATCTTCATCAGAGGATGATGAAACTCTGATCACTCTGAACTCGCAGAATAAGGATGAAAGTCAGTAA 1923 0.4545 MEQLQASTNQELNQQIPHFNISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPTSSDPCPPETRTQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKFLEAINNKFAVGMRFKMRFEGDDSPERRFSGTIVGVGDLSPEWPDSKWRSLKVQWDEPATISRPERVSPWEIEPFVASAPVNLVQPPVKSKRPRPVDVPSSEMVSNSAASAFWYHGSSQSHEPAQLGGATEAHSNEIQVLWNAMNNTSSCNSRFRVEGAWPPSHLNISSNCLPDPKNNKSVTAHPSVPGYPPVSSWPNDAPAYDQIENGKKSENAVGCRLFGVNLTNNSNNVAPLEKESRGCTASPSGSKESIPCEAKSNQNPNCSVYQKEQKQEASNASPNERQSRQASLPATRTRTKVQMQGVAVGRAVDLTMLNGYDNLIEELEKLFDIKGELRTQNKWAVTFRDDENDRMLVGDDPWPEFCKMVKRIIIYSSEEVKKMNATCPVPPSSSEDDETLITLNSQNKDESQ 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0385 640 ProSiteProfiles B3 DNA-binding domain profile. 76 178 IPR003340 GO:0003677
Prci13g0385 640 Pfam AUX/IAA family 502 607 IPR033389 -
Prci13g0385 640 Coils Coil 548 568 - -
Prci13g0385 640 MobiDBLite consensus disorder prediction 613 640 - -
Prci13g0385 640 Gene3D - 237 309 - -
Prci13g0385 640 Gene3D - 521 612 - -
Prci13g0385 640 MobiDBLite consensus disorder prediction 405 434 - -
Prci13g0385 640 Gene3D - 73 177 IPR015300 -
Prci13g0385 640 CDD B3_DNA 74 176 IPR003340 GO:0003677
Prci13g0385 640 ProSiteProfiles PB1 domain profile. 524 605 IPR000270 GO:0005515
Prci13g0385 640 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 612 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci13g0385 640 FunFam Auxin response factor 237 308 - -
Prci13g0385 640 SMART B3_2 76 178 IPR003340 GO:0003677
Prci13g0385 640 Pfam B3 DNA binding domain 76 176 IPR003340 GO:0003677
Prci13g0385 640 MobiDBLite consensus disorder prediction 458 529 - -
Prci13g0385 640 Pfam Auxin response factor 202 281 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci13g0385 640 SUPERFAMILY CAD & PB1 domains 519 600 - -
Prci13g0385 640 SUPERFAMILY DNA-binding pseudobarrel domain 67 205 IPR015300 -
Prci13g0385 640 FunFam Auxin response factor 74 178 - -
Prci13g0385 640 FunFam Auxin response factor 519 612 - -
Prci13g0385 640 MobiDBLite consensus disorder prediction 615 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0385 Prci-Chr13 2698905 2704247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0385 1 611 B3 DNA Binding Superfamily AT4G23980 57.419 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci13g0385 AUX_IAA 1.5e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0385 K14486 - gmx:100795763 868.996