Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0384 ATGGCACATCTCGGGTGTAATCTCAGGGGCCCGACCACTTCTCAAGCGGATACAGGTTTGGAAGATGGCGATCTGTACACAGAGTTATGGAAGTTGTGCGCAGGGCCTCTGGTGGATGTTCCTCGTGCTGGGGAGAGAGTCTTTTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCATCAACGAATCAGGAATTGAACCAACAGATTCCCCATTTCAATATTTCATCTAAGATTCTATGCCGTGTTATGCACATTCAGCTATTGGCGGAACCAGACACTGATGAAGTTTATGCTCGCATTACTTTGCTTCCAGAATCAGATCAAACTGAGCCTACGAGCTCCGATCCATGTCCACCTGAGACTCGGACTCAGGCTTTTCATTCATTTTGCAAAATACTAACGGCATCAGATACTAGCACGCATGGAGGGTTTTCAGTTCTGCGGAAGCATGCTAATGAGTGCTTGCCTCAATTGGACATGACCCAAGCAACCCCAACTCAGGAGTTGGCAGCAAAGGATCTTCATGGGTTTGAGTGGAAATTTAAGCATATATTCCGAGGTCAACCAAGGAGGCACTTGCTTACGACTGGCTGGAGTACATTTGTCACTTCCAAAAGACTGGTAGCTGGAGATGCATTTGTGTTCCTGAGGGGGGAGAACGGGGAACTGAGAGTTGGTGTCCGGCGCCTTGCCCGGCAACAGAGTCCAATGCCTTCATCGGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCATGCTGTTGCCACTCGTACCATGTTTGTAGTTTACTACAAACCAAGGACCAGACAATATATAATTGGTTTAAACAAGTTTCTGGAGGCGATCAACAATAAATTCGCGGTTGGCATGCGTTTCAAGATGAGATTTGAGGGAGATGATTCGCCTGAGAGAAGGTTTTCAGGAACTATTGTTGGTGTTGGCGATTTATCTCCAGAGTGGCCAGACTCAAAGTGGAGGTCATTGAAGGTCCAATGGGATGAACCTGCAACAATCTCAAGGCCAGAGAGAGTTTCTCCCTGGGAGATAGAACCTTTTGTGGCTTCTGCACCTGTAAATCTCGTTCAACCGCCAGTGAAGAGCAAAAGACCTCGACCTGTTGATGTACCATCTTCCGAAATGGTTTCCAATTCAGCTGCTTCAGCTTTCTGGTATCACGGATCATCCCAGTCCCATGAACCTGCTCAATTAGGTGGCGCAACAGAAGCCCATAGCAATGAGATCCAGGTTTTATGGAACGCAATGAACAACACTAGTTCCTGTAACTCTAGATTCCGTGTTGAAGGAGCGTGGCCTCCATCACATTTGAACATCTCTTCAAACTGTCTTCCTGACCCGAAAAACAACAAATCTGTTACAGCTCATCCATCTGTCCCTGGTTATCCTCCTGTCTCTTCTTGGCCAAATGATGCTCCAGCATATGATCAAATTGAGAATGGGAAGAAATCTGAGAACGCTGTGGGGTGCCGGCTATTTGGAGTGAATTTGACTAACAACTCTAATAATGTTGCTCCTCTAGAGAAAGAGTCAAGAGGCTGTACTGCTAGCCCTAGTGGTTCCAAAGAATCTATTCCATGTGAAGCTAAGTCAAATCAGAATCCCAATTGTTCAGTGTACCAAAAGGAGCAGAAGCAAGAAGCATCTAATGCATCACCAAATGAGAGACAGAGCAGGCAGGCATCTTTACCAGCCACGAGGACTCGGACAAAGGTACAAATGCAAGGAGTGGCTGTTGGTCGTGCTGTTGACTTGACTATGTTGAATGGCTATGACAATCTGATTGAAGAGCTGGAAAAGTTGTTCGACATTAAAGGAGAGCTTCGTACACAGAACAAATGGGCTGTTACTTTTAGAGATGATGAGAATGACAGGATGCTTGTGGGCGATGATCCATGGCCTGAGTTTTGCAAAATGGTGAAGAGGATCATAATATATTCAAGCGAGGAAGTGAAGAAGATGAATGCAACGTGCCCGGTTCCTCCATCTTCATCAGAGGATGATGAAACTCTGATCACTCTGAACTCGCAGAATAAGGATGAAAGTCAGTAA 2085 0.4614 MAHLGCNLRGPTTSQADTGLEDGDLYTELWKLCAGPLVDVPRAGERVFYFPQGHMEQLQASTNQELNQQIPHFNISSKILCRVMHIQLLAEPDTDEVYARITLLPESDQTEPTSSDPCPPETRTQAFHSFCKILTASDTSTHGGFSVLRKHANECLPQLDMTQATPTQELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVATRTMFVVYYKPRTRQYIIGLNKFLEAINNKFAVGMRFKMRFEGDDSPERRFSGTIVGVGDLSPEWPDSKWRSLKVQWDEPATISRPERVSPWEIEPFVASAPVNLVQPPVKSKRPRPVDVPSSEMVSNSAASAFWYHGSSQSHEPAQLGGATEAHSNEIQVLWNAMNNTSSCNSRFRVEGAWPPSHLNISSNCLPDPKNNKSVTAHPSVPGYPPVSSWPNDAPAYDQIENGKKSENAVGCRLFGVNLTNNSNNVAPLEKESRGCTASPSGSKESIPCEAKSNQNPNCSVYQKEQKQEASNASPNERQSRQASLPATRTRTKVQMQGVAVGRAVDLTMLNGYDNLIEELEKLFDIKGELRTQNKWAVTFRDDENDRMLVGDDPWPEFCKMVKRIIIYSSEEVKKMNATCPVPPSSSEDDETLITLNSQNKDESQ 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0384 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 666 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci13g0384 694 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci13g0384 694 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Prci13g0384 694 FunFam Auxin response factor 291 362 - -
Prci13g0384 694 FunFam Auxin response factor 573 666 - -
Prci13g0384 694 SMART B3_2 130 232 IPR003340 GO:0003677
Prci13g0384 694 SUPERFAMILY CAD & PB1 domains 573 654 - -
Prci13g0384 694 Gene3D - 127 231 IPR015300 -
Prci13g0384 694 MobiDBLite consensus disorder prediction 667 694 - -
Prci13g0384 694 FunFam Auxin response factor 128 232 - -
Prci13g0384 694 ProSiteProfiles PB1 domain profile. 578 659 IPR000270 GO:0005515
Prci13g0384 694 MobiDBLite consensus disorder prediction 512 583 - -
Prci13g0384 694 Pfam AUX/IAA family 556 661 IPR033389 -
Prci13g0384 694 Gene3D - 575 666 - -
Prci13g0384 694 MobiDBLite consensus disorder prediction 669 694 - -
Prci13g0384 694 Coils Coil 602 622 - -
Prci13g0384 694 CDD B3_DNA 128 230 IPR003340 GO:0003677
Prci13g0384 694 MobiDBLite consensus disorder prediction 459 488 - -
Prci13g0384 694 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Prci13g0384 694 Gene3D - 291 363 - -
Prci13g0384 694 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0384 Prci-Chr13 2698903 2704247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0384 25 665 B3 DNA Binding Superfamily AT4G23980 58.769 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci13g0384 AUX_IAA 1.7e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0384 K14486 - gmx:100795763 951.814