Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0382 ATGGAACAGATGAGGATTGAGGTGGGTCTGGGAGGCATGTTGTGGAACGAGGACGAACGAGACATGGTTGCGGCGGTTCTGGGCACTCAAGCCTTCGATTACCTGGTAAACCACTCAGTTTCGAATGAGAATCTGTTAATGGCCATGGTGACAGACGAGAATCTCCAAAAGAAGCTGTCGGATCTCGTGGAGCGTTCAAACGTATCGAATTTCACCTGGAACTATGCCATTTTCTGGCAAATTTCTCAGTCAAAATCCGGCGAGTGGGTTCTGGGTTGGGGCGATGGGTGTTGCAGAGAACCCGATGACGGAGAAGAAGAGGGATTCAAAGGAATCCTGAGCCTTCGCGTGGAGGACGGGGTGCAGCAAAGGATGAGGAAGAGGGTGTTGCAGAAGCTTCACACGACCTTTGGCGGTTCAGAAGAAGACAATTACGTGTACGGATTAGACCGTGTGACTGATACTGAGTTGTTCTTTCTCGCTTCCATGTACTTCTCTTTCCCTCGTGGCTATGGAGGTCCAGGTAAGTGTCTTGCATCTGGTAAGCATTTATGGCTCACGGATGCACAGAAATCTCCAGTTGAGTACTGTGTGAGATCATTTCTGGTTAAATCAGCTGGAATCCAGACCGTGGTTTTGATCCCTACTGATAGGGGCGTGGTGGAACTGGGTTCCGCCAAGTTGGTCAAAGAGAACTTAGAATTGTTGCAGGCAATCAAATCGGAGTTCTCCATTGAATCCACATTCCCGAGGGCTAACAAGTCAATTCCGCCGCCTCATCCTCCTCTGGCTCCGGCGACGACGGGGAGAAGAGATGAACTCACCATATTTCCGGCCTTAACCGCTTCTGACAAAGTTGAAGTAGTCCCGAAGATTTTTGGGCAGGATTTGAACAAGGCCAACCCGGTTCGAACCAATCATTTCAGAGAGAAACTTGCTATCAGGAAAATGGAGGAGAGGCCATGGTTAGGTGGAGGAGGAGGAGGTCATCAACCCAATGGGCTTCATCCTCGCAATGGTGTTCCACCTTCAAGCTGGACACCGGCTAACAATGGCGTGAGGCAAGGCAGTCCTGTTGAAAGTTATGCACCTAGATTGTCGACGAGCAATGTGCCGGTTCTGGACCTTGTTAATGGGGTTAATAATTATCAGGTACAAAGGAAAGCGCCAATGCAGATTGATTTCTCAGGAGCTACTTCCAGGTCTGCTGTGACTGCTGTGAGACCCAATGGCGGCGAATCAGAGCAATCTGATGCTGACGCTTCGTTCAGGGAGGAGCTGCCGGGCGGAGGAGGAGGAGCCGATGAAAGGCGGCCGAGGAAGCGCGGAAGAAAGCCGGCAAACGGGAGGGAAGAACCTCTGAACCATGTGGAAGCTGAGAGGCAAAGGCGCGAGAAGCTGAACCAACGGTTCTATGCTTTGCGAGCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCCTCTTTGCTGGGAGACGCCATCGCCTACATCAATGAGCTCCAGGCCAAACTCAAGGCCATGGAATCTGAGAAAGAGATAATACTTGGAAGCACTTCGACTTCAAGGGATTCATCAACGGAGCCCAACTTTATACAGATTAATCAAACTCGTCCACAAGTGGAAATCCAAGCTGGCGGCGACGAGGTCATTGTGCGGGTGATCTCACCAATCAATTCTCACCCAGTCTCAGGAGTGATCAAAGCGCTTAAAGAAGCAAACGTGAATGTCTTGGATTCAAAACTCGCTGCCGCAGGTGAAGCCGTGTTCCATACGTTCGTGATCAAGCCTCAAGGACCTGAGCAGCTGACAAAGGAGAAGTTGATTGCTGCATTTTCCGGCGAATCCAACTTATCGCAGCCATTATCATTGACTGGCCATTAA 1881 0.5035 MEQMRIEVGLGGMLWNEDERDMVAAVLGTQAFDYLVNHSVSNENLLMAMVTDENLQKKLSDLVERSNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCREPDDGEEEGFKGILSLRVEDGVQQRMRKRVLQKLHTTFGGSEEDNYVYGLDRVTDTELFFLASMYFSFPRGYGGPGKCLASGKHLWLTDAQKSPVEYCVRSFLVKSAGIQTVVLIPTDRGVVELGSAKLVKENLELLQAIKSEFSIESTFPRANKSIPPPHPPLAPATTGRRDELTIFPALTASDKVEVVPKIFGQDLNKANPVRTNHFREKLAIRKMEERPWLGGGGGGHQPNGLHPRNGVPPSSWTPANNGVRQGSPVESYAPRLSTSNVPVLDLVNGVNNYQVQRKAPMQIDFSGATSRSAVTAVRPNGGESEQSDADASFREELPGGGGGADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMESEKEIILGSTSTSRDSSTEPNFIQINQTRPQVEIQAGGDEVIVRVISPINSHPVSGVIKALKEANVNVLDSKLAAAGEAVFHTFVIKPQGPEQLTKEKLIAAFSGESNLSQPLSLTGH 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0382 626 PANTHER MYC 29 610 IPR045084 GO:0003700|GO:0006355
Prci13g0382 626 CDD bHLH_AtAIB_like 448 514 - -
Prci13g0382 626 Pfam Helix-loop-helix DNA-binding domain 455 501 IPR011598 GO:0046983
Prci13g0382 626 SMART finulus 457 506 IPR011598 GO:0046983
Prci13g0382 626 FunFam Transcription factor bHLH13 444 517 - -
Prci13g0382 626 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 454 514 IPR036638 GO:0046983
Prci13g0382 626 Coils Coil 490 517 - -
Prci13g0382 626 MobiDBLite consensus disorder prediction 404 462 - -
Prci13g0382 626 MobiDBLite consensus disorder prediction 430 462 - -
Prci13g0382 626 Gene3D - 445 514 IPR036638 GO:0046983
Prci13g0382 626 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 451 500 IPR011598 GO:0046983
Prci13g0382 626 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 55 243 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0382 Prci-Chr13 2641209 2644026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0382 8 614 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.969 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci13g0382 bHLH-MYC_N 2.1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0382 - - pcin:129291836 1236.86