Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0365 ATGTCTTTAGGTGATAGAATGGAATCGACTAGCCTTGATAGTACTGTATCATCCTTGACTATGGATGATGATGAGCATATTCCCCATCAGTTTTCCTCTATCACGAAGCTGCACAACAATGGTCCTGGTACTACCAGCGTCCACGAGTTGCTTGAATGCCCTGTCTGCACCAGCTCCATGTATCCTCCAATCCATCAGTGTCACAATGGGCATACACTTTGTTCAACTTGTAAGACAAGGGTACACAATCGATGTCCGACTTGTAGACAGGAACTTGGGGATATAAGGTGTCTGGCGCTGGAGAAAATAGCAGAATCACTTGAACTGCCTTGCAGATACGGCTCTCTTGGTTGTCCAGAGATATTTCCCTATTATAGCAAACTCAAACACGAGGCTATTTGTAACTTCAGACCATACAACTGCCCCTATGCTGGATCAGACTGTTCTGTTGTTGGGGATATTCCATACCTTGTTGCTCATTTACGGGATGACCACCGGGTTGATATGCATTCAGGATGCACATTTAACCATCGCTATGTCAAATCTAATCCTGTGGAAGTAGAAAATGCTACATGGATGTTAACTGTATTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCCTTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTCCGGTTCATGGGCGATGAAAGAGAAGCTCGGAGCTACAGTTACAGCCTGGAGATAGGAGGGAACGGACGAAAACAAATATGGGAAGGAAGCCCAAGAAGCATAAGAGACAGCCATAAGAAAGTTAGAGACAGCCATGATGGCCTTATCGTGTACAGAAACATGGCACTTTTCTTCTCAGGCGGGGACCGGAAAGAGTTGAAGCTTCGAGTCACCGGAAGGATATGGAAAGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTCTGTAGTTAA 948 0.4557 MSLGDRMESTSLDSTVSSLTMDDDEHIPHQFSSITKLHNNGPGTTSVHELLECPVCTSSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYGSLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARSYSYSLEIGGNGRKQIWEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0365 315 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Prci13g0365 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 36 300 - -
Prci13g0365 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 161 IPR013083 -
Prci13g0365 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 294 IPR008974 GO:0005515
Prci13g0365 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 105 IPR013083 -
Prci13g0365 315 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Prci13g0365 315 CDD Sina 167 295 - -
Prci13g0365 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
Prci13g0365 315 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Prci13g0365 315 SUPERFAMILY RING/U-box 44 92 - -
Prci13g0365 315 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Prci13g0365 315 SUPERFAMILY TRAF domain-like 106 298 - -
Prci13g0365 315 CDD RING-HC_SIAHs 51 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0365 Prci-Chr13 2556267 2559601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0365 9 301 C3H Transcription Factor Family AT2G41980 71.429 3.36e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0365 K04506 - gmx:100792687 614.764