Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g0343 ATGATAATTAAGCGGACTATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCAGGATGCCGAGGACTATGGATGTGCATCGGTTCCGAAGAAGCGGAAACGGTTCGGGGTCGTGGTGCAGCGAAGGATCGTGTTGGCTAGTGAGGTTCTATCGAATTCAAATTCTGCGCTATTGAATGGTAAGACAGCAATGGAGCAAGGCTCTGAAAGGATTCGGCCTCCACTATTGCGATCGTCTCGTGGTCGATCTCAAATGCTTCCATCGAGGTTCAATGATTCTGTCCTCGGAACATGGAAGAATCGGGGAATCAAGTGGAGGGACGCAGACTCCAGCTTTGAAGATGATACTATTTTAGTTAAGATAAGGCGGGGTTTAGTGGATTGGGATTTTGCTACTAGAACGTCAATTAATGGAAATCGTTCATCAGCAGTTAAAACTGAGAGTTATACGTCTGGTCTAAGTTTTGAGGGTGTGGCAAAGCTTGATCGAAATGCTGCAAAAAGGAAGGATATCTACAAACCGGAGGATTTTGCTTTGGGTGATATAGTTTGGGCAAAGTGTGGAAAGAGGTATCCAGCTTGGCCTGCTGTAGTGATTGATCCTATCCTGCAAGCTCCGAAGTCCGTTCTGAGTTGTTGTGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTATGCATGGGTGAAGCAGGGAATGATATTCCCTTTCATGGAGTTCATGGACAGATTCCAGGGGCAGACTCGGCTGACAAGAGCAAACCAAGTGACTTTCAGATGGTGGAAGATTTTAGATGAAATGAGACCTTGTGCTGGCTGTGGTCTGACTTTGCCCTGCAAAACTATGAAGAAGATTAAGGATTCATATTCTTCAGCTCATCTATATTGCAAACTTTGTGCCAAGTTACGGAAATCAAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTGTGTTGTGACGGTTGTAATGTTTGGATTCACGCTGAATGTGCTAAATATCCAGTAAACTTTTTAAGGATCGAACATACAGATTACTATTGTCCAGATTGCAAAGCAAATTTCAACTGTAAATTTTCAGCATCACAAATATGCAAGCCAAAAATCAAATCAACAGAAAATAGCCAAAAGCCTGTTGTACCTGACAAGGTAACGGTGGTGTGCAATGGCATGGAAGGGTATTACATTCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCATGTGGGGTGCGAAAGCAGACACTGAGTGAATGGGAACGGCATACAGGTTGCAGGGCTAAAAAATAATATAGTGTGAGAGTAAAGAGTACAATGCTTCCTCTGGAAAAATGGATCGCAGAAAATAATACACAAGGTGGAGTTTCTATGCAGTTAGATCAACAGCAGGTACTTGCCTTTCTGCAAGAGAAGTATGAACCAGTATATCCAAAGTGGACTACAGAAAGATGTGCGGTTTGTAGATGGGTTGAAGATTGGGATGATAATAAAATTATCATCTGCAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGAGCAAAGAATGTTAAGGATTTTACTTCTTGGGTCTGTAGAGTTTGCGAAACCCCTGATGTTGAGAGAGAATGTTGCCTTTGTCCTGTTAAAGGTGGAGCTCTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACATGTGCTTGGTTCCGGCCTGAAGTTGGATTCTCAAACCATGAGATAATGGAACCTGCCTTTGGAATCCTTAAAATTCCTCCAAGTTCCTTTTTGAAGACTTGTGTTATCTGTAAACAAAGCCATGGATCCTGTGCAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCTAGGGCTGGATACAGCATGGAATTGCATTCTATGGAGAAGAATGGAGTTCAGATAACGAAGAAGTTAATATATTGTGCATGTCACAGGCTTCCGAACCCAGATTCTGTGATGGTTATACATACTCTTGGGGTCTTCTCTCCCAGGACTTCCCTGCAAAATCATAAGGGATGCTTCAGGGGATCAAGGCTGGTATCATCAAAAAACATAGAACTTCTTGAATCTTCAGCCCCTGAGACTAATGAATTTGAACCACTGTCTGCTGCAAGATGTCGTGTTTATAGAAGATCTTCCAAGAGCGCTGATGAGCCAATAATACATTTAGTGGGGGGACCAAGTCGTCATTTGTTAAGTTCTATAATTCAATTGAACAGCTATAAGGACTCAGAAGATTCTAAAGTATTTACTTCGTTCAAGGAACGTCTTCACCATTTGCAGAGAACTGAAAATCATCGAGTTTGCTTTGGAAAATCGGGTATACATGGATGGGGCCTCTTTGCTCGAAGAGATATACAAGAAGGAGAGATGGTTGCTGAGTACCGTGGTGAGCAGGTAAGACGAAGTGTTGCTGATATGAGGGAGGCTATGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATCAGTGAAGAGGTGGTCATCGATGCTACACATAGGGGAAATATAGCCCGGCTGATAAACCACTCTTGCATGCCTAACTGCTATGCGAGGATTATGAGCATGGGTGCTGAGGAGAGCCGGATTGTTCTTATTGCCAAGACCCATGTTTCTGCTGGGGAAGAACTAACGTATGATTACTTGTTTGATCCAGATGAGCGGGATGAACTGAAAGTTCCTTGCCTTTGTAAAGCTCCCAATTGTAGGAAATTTATGAACTAG 2799 0.428 MIIKRTMKIEMPNLKRCKLEEQDAEDYGCASVPKKRKRFGVVVQRRIVLASEVLSNSNSALLNGKTAMEQGSERIRPPLLRSSRGRSQMLPSRFNDSVLGTWKNRGIKWRDADSSFEDDTILVKIRRGLVDWDFATRTSINGNRSSAVKTESYTSGLSFEGVDXKLDRNAAKRKDIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFMEFMDRFQGQTRLTRANQVTFRWWKILDEMRPCAGCGLTLPCKTMKKIKDSYSSAHLYCKLCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWIHAECAKYPVNFLRIEHTDYYCPDCKANFNCKFSASQICKPKIKSTENSQKPVVPDKVTVVCNGMEGYYIPKLHLVMCKCGSCGVRKQTLSEWERHTGCRAKKWXYSVRVKSTMLPLEKWIAENNTQGGVSMQLDQQQVLAFLQEKYEPVYPKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHEIMEPAFGILKIPPSSFLKTCVICKQSHGSCASCCKCATYFHVMCASRAGYSMELHSMEKNGVQITKKLIYCACHRLPNPDSVMVIHTPXGVFSPRTSLQNHKGCFRGSRLVSSKNIELLESSAPETNEFEPLSAARCRVYRRSSKSADEPIIHLVGGPSRHLLSSIIQLNSYKDSEDSKVFTSFKERLHHLQRTENHRVCFGKSGIHGWGLFARRDIQEGEMVAEYRGEQVRRSVADMREAMYRSEGKDCYLFKISEEVVIDATHRGNIARLINHSCMPNCYARIMSMGAEESRIVLIAKTHVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g0343 935 FunFam Histone-lysine N-methyltransferase 554 673 - -
Prci13g0343 935 ProSiteProfiles Zinc finger PHD-type profile. 502 553 IPR019787 -
Prci13g0343 935 CDD PWWP_AtATX3-like 185 281 - -
Prci13g0343 935 Pfam PHD-finger 321 373 IPR019787 -
Prci13g0343 935 SUPERFAMILY Tudor/PWWP/MBT 175 265 - -
Prci13g0343 935 Pfam PHD-finger 517 551 - -
Prci13g0343 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 377 IPR013083 -
Prci13g0343 935 SUPERFAMILY SET domain 786 932 IPR046341 -
Prci13g0343 935 SMART set_7 793 916 IPR001214 GO:0005515
Prci13g0343 935 SUPERFAMILY FYVE/PHD zinc finger 319 379 IPR011011 -
Prci13g0343 935 Pfam PHD-zinc-finger like domain 558 670 - -
Prci13g0343 935 ProSiteProfiles Extended PHD (ePHD) domain profile. 556 671 IPR034732 -
Prci13g0343 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 553 IPR013083 -
Prci13g0343 935 Pfam PWWP domain 185 265 IPR000313 -
Prci13g0343 935 ProSiteProfiles PWWP domain profile. 184 253 IPR000313 -
Prci13g0343 935 ProSiteProfiles Zinc finger PHD-type profile. 319 374 IPR019787 -
Prci13g0343 935 CDD PHD_TCF19_like 322 371 - -
Prci13g0343 935 CDD SET_SETD1-like 782 931 - -
Prci13g0343 935 ProSitePatterns Zinc finger PHD-type signature. 505 550 IPR019786 -
Prci13g0343 935 Gene3D SET domain 769 935 IPR046341 -
Prci13g0343 935 Gene3D - 175 278 - -
Prci13g0343 935 ProSiteProfiles SET domain profile. 793 910 IPR001214 GO:0005515
Prci13g0343 935 SMART PWWP_4 182 251 IPR000313 -
Prci13g0343 935 CDD PHD_ATX3_4_5_like 504 550 IPR042011 -
Prci13g0343 935 PANTHER PHD FINGER PROTEINS 50 374 - -
Prci13g0343 935 FunFam Histone-lysine N-methyltransferase 767 935 - -
Prci13g0343 935 SUPERFAMILY FYVE/PHD zinc finger 503 567 IPR011011 -
Prci13g0343 935 SMART PHD_3 504 551 IPR001965 -
Prci13g0343 935 SMART PHD_3 321 372 IPR001965 -
Prci13g0343 935 SMART PHD_3 615 671 IPR001965 -
Prci13g0343 935 Pfam SET domain 804 909 IPR001214 GO:0005515
Prci13g0343 935 SMART PostSET_3 919 935 IPR003616 -
Prci13g0343 935 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 935 IPR025780 -
Prci13g0343 935 ProSiteProfiles Post-SET domain profile. 919 935 IPR003616 -
Prci13g0343 935 Coils Coil 931 935 - -
Prci13g0343 935 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 672 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g0343 Prci-Chr13 2435440 2444108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g0343 278 346 EF-hand Containing Proteins AT5G28340 56.522 3.04e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci13g0343 zf-HC5HC2H_2 4.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g0343 - - gmx:100793624 1407.89